PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_13481_BGI-A2_v1.0
Common NameF383_05910
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family TALE
Protein Properties Length: 644aa    MW: 70236.5 Da    PI: 7.5165
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_13481_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.41.4e-093623991954
                                 HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
                    Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                                 Fe   ++yp+ +++  LAk++gLt +qV++WF N R +
  Cotton_A_13481_BGI-A2_v1.0 362 FEHflHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVR 399
                                 554459******************************88 PP

2BELL122.51.8e-39226297172
                        BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                                 erqe+q+kkakL+s+l+eVd+rY+qy++q+q+vis Fe+ ag+gsak Yt+lAlk+iS++FrcLkdai++qi
  Cotton_A_13481_BGI-A2_v1.0 226 ERQEIQMKKAKLISMLDEVDQRYRQYHHQMQIVISTFEQTAGIGSAKTYTALALKTISKQFRCLKDAIIGQI 297
                                 79*********************************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005745.1E-62148295IPR006563POX domain
PfamPF075268.3E-50153293IPR006563POX domain
PROSITE profilePS5007112.195340403IPR001356Homeobox domain
CDDcd000863.60E-12343404No hitNo description
SMARTSM003895.3E-9343407IPR001356Homeobox domain
SuperFamilySSF466898.13E-17344409IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.1E-29346409IPR009057Homeodomain-like
PfamPF059202.6E-18360399IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 644 aa     Download sequence    Send to blast
MAAYFHGNPE IQAADDLQTL VLMNPAYVHY SNTPPPPPPS NNLVFLNSLS PNAPSSHSQQ  60
LVGIPLPAVT SRSNQDAISS LHGLVQRLHY NSYNPIDPSG APRDTPRAQQ GLSLTLSSQH  120
QPSNYGSQPQ AVSGGSASSC SAVTNGVSGI QSVLLSSKYL RAAQELLDEV VNVDNTGFTK  180
TEMAKKGCGN DSNRSKGTGE LSAAAGDGSG GEDAVGKRRT ELSTAERQEI QMKKAKLISM  240
LDEVDQRYRQ YHHQMQIVIS TFEQTAGIGS AKTYTALALK TISKQFRCLK DAIIGQIRAV  300
NKSLGEEDRL GGKTEGSGLK FVDHQLRQQR ALQQLGMIQH NAWRPQRGLP ERSVSVLRAW  360
LFEHFLHPYP KDSDKHMLAK QTGLTRSQVS NWFINARVRL WKPMVEEMYL EEIKEQEQNN  420
EDSASKSTGP TPAKNQAKSL SSSKQDNSAN QNASSMSISM ASTSPLAGNA QNQSGYSFIG  480
SSELEGITQG SPKKPRSTEV LLQSPIDMDT KQREAADDVS IKFGKEGYSF MGTDTNFIGG  540
FGQYPIAEMA RFDAEHFAPR FPGNGVSLTL GLPHCENLSL SATHQTFLPN QTLQMGRRLD  600
IGEPNEYGAI NPSTPHSSAA YEIENIDVQN RKRFAAQLLP DFVA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A4e-16349407563Homeobox protein Meis2
3k2a_B4e-16349407563Homeobox protein Meis2
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017608245.10.0PREDICTED: BEL1-like homeodomain protein 1
RefseqXP_017608246.10.0PREDICTED: BEL1-like homeodomain protein 1
RefseqXP_017608247.10.0PREDICTED: BEL1-like homeodomain protein 1
RefseqXP_017608248.10.0PREDICTED: BEL1-like homeodomain protein 1
RefseqXP_017608249.10.0PREDICTED: BEL1-like homeodomain protein 1
SwissprotQ9SJ560.0BLH1_ARATH; BEL1-like homeodomain protein 1
TrEMBLA0A0B0NJ510.0A0A0B0NJ51_GOSAR; BEL1-like homeodomain protein 1
STRINGGorai.006G149100.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50082650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35940.31e-167BEL1-like homeodomain 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]