PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_11268_BGI-A2_v1.0
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family G2-like
Protein Properties Length: 382aa    MW: 43479.8 Da    PI: 8.49
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_11268_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.65e-3287140255
                     G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                                 prlrWtp+LH +Fv+ave+LGG+++AtPk +l+lm+vkgL+++hvkSHLQ+YR+
  Cotton_A_11268_BGI-A2_v1.0  87 PRLRWTPDLHLSFVHAVERLGGQDRATPKLVLQLMNVKGLSIAHVKSHLQMYRS 140
                                 8****************************************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.11583143IPR017930Myb domain
Gene3DG3DSA:1.10.10.608.4E-3083141IPR009057Homeodomain-like
SuperFamilySSF466898.06E-1586141IPR009057Homeodomain-like
TIGRFAMsTIGR015571.2E-2287142IPR006447Myb domain, plants
PfamPF002499.4E-988139IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MMEMHGEEKR VNSEVCSHKC TNFDLNEEAS CQDNDYVGKE GEVSVEEEEI EKRSTEEGSS  60
SNNNGGEEGG INDRRRTVRQ YVRSKLPRLR WTPDLHLSFV HAVERLGGQD RATPKLVLQL  120
MNVKGLSIAH VKSHLQMYRS KKLDESGQVL SKSNRSIKGR DEIRRMSLQR AAAVSSSPHQ  180
RLRMENGGIV LAAESLENDI TLTRFRSPLY QRSLEFKPGF PRHHLEPNSL ISKAGGEKNG  240
FPKTGGLLSN EGQSNQIHGM EMRIGGMRRG WVLEEKRWQM ICNRWEVERE MSKHTFIGGH  300
YSTSSTQGNN TSTVGQFVSD NLSKFTSEFD APFLVELNQD KVMDREWLPD LQLRLSQRIG  360
IEDKKNTHCK GTHEINTRLS LS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A7e-1788142357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B7e-1788142357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C7e-1788142357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D7e-1788142357Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017605929.10.0PREDICTED: uncharacterized protein LOC108452637
TrEMBLA0A1U8PM690.0A0A1U8PM69_GOSHI; uncharacterized protein LOC107960428
STRINGGorai.009G161800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36328184
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38300.19e-38G2-like family protein