PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_10539_BGI-A2_v1.0
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 169aa    MW: 18656.8 Da    PI: 8.94
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_10539_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.90.000344264123
                                EEETTTTEEESSHHHHHHHHHHT CS
                     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                                + C+ C+k+Fs+   L  H  +H
  Cotton_A_10539_BGI-A2_v1.0 42 FACKTCDKRFSSFQALGGHRASH 64
                                78**********99999998887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139126.0E-124166IPR007087Zinc finger, C2H2
SuperFamilySSF576677.18E-941106No hitNo description
SMARTSM003550.194264IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.1184269IPR007087Zinc finger, C2H2
PROSITE patternPS0002804464IPR007087Zinc finger, C2H2
PfamPF139124.7E-1083107IPR007087Zinc finger, C2H2
SMARTSM003550.2384106IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.64284106IPR007087Zinc finger, C2H2
PROSITE patternPS00028086106IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 169 aa     Download sequence    Send to blast
MKRDREDREI EAMAMANCLM LLSKVGQIDP PKHNTIHQRG VFACKTCDKR FSSFQALGGH  60
RASHKKPRFT DVDLPVSPKK PKTHECSICG LEFPIGQALG GHMRKHRVVS NEGMVVTRPV  120
TEKLNGDDAD NDGGLCLDLK LAPCGIDLNL KLEKAAAPPR MPPVVHLFI
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012464123.11e-119PREDICTED: zinc finger protein ZAT12-like
SwissprotQ424102e-33ZAT12_ARATH; Zinc finger protein ZAT12
TrEMBLA0A0D2U7I51e-119A0A0D2U7I5_G
STRINGVIT_06s0004g04180.t012e-43(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM53128150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59820.16e-33C2H2 family protein