PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_09199_BGI-A2_v1.0
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family LBD
Protein Properties Length: 297aa    MW: 33520.3 Da    PI: 6.3637
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_09199_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260124.55.3e-3910108199
                      DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilkl 83 
                                 aCaaCk++rrkC ++C lapyfpa+q+k f+n+hklFG+sn++k+lk+l+++++ +am+s+ y+A++r + PvyG++gvi++l
  Cotton_A_09199_BGI-A2_v1.0  10 ACAACKYQRRKCIPECLLAPYFPADQTKVFQNAHKLFGVSNIVKILKSLDPSQHAEAMRSIKYQANVRDKFPVYGCLGVIRQL 92 
                                 7********************************************************************************** PP

                      DUF260  84 qqqleqlkaelallke 99 
                                   q++ l++e +++ +
  Cotton_A_09199_BGI-A2_v1.0  93 YYQIQLLEEEFHSVLS 108
                                 *********9988765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.1619110IPR004883Lateral organ boundaries, LOB
PfamPF031952.9E-3710105IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MTLKSGTTSA CAACKYQRRK CIPECLLAPY FPADQTKVFQ NAHKLFGVSN IVKILKSLDP  60
SQHAEAMRSI KYQANVRDKF PVYGCLGVIR QLYYQIQLLE EEFHSVLSQL EMYRQYHHEV  120
PSQLELGMAP PTNGLNFLTA VSDMPVSMQH SYSNSNNIGY CSSYVDSKDH NNNNNNSNSN  180
SNNNNNNNSL WIQHPFLATN NSSSSNSNEN NPLMAIQSQL LVSNTQPLVK QHEVVQDYDE  240
LHPFFDTIDD RQSFIHSKEP YDSSCEDSAK EKTQAIELVP NNELKNAAAC FSLTSVH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A4e-3061137114LOB family transfactor Ramosa2.1
5ly0_B4e-3061137114LOB family transfactor Ramosa2.1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6148990.0JX614899.1 Gossypium hirsutum clone NBRI_GE58613 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017617639.10.0PREDICTED: LOB domain-containing protein 27-like
SwissprotQ9STS65e-61LBD27_ARATH; LOB domain-containing protein 27
TrEMBLA0A0D2S6930.0A0A0D2S693_GOSRA; Uncharacterized protein
STRINGGorai.007G034800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63032746
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47870.12e-56LOB domain-containing protein 27
Publications ? help Back to Top
  1. Kim MJ,Kim M,Kim J
    Combinatorial interactions between LBD10 and LBD27 are essential for male gametophyte development in Arabidopsis.
    Plant Signal Behav, 2015. 10(8): p. e1044193
    [PMID:26252070]
  2. Kim M,Kim MJ,Pandey S,Kim J
    Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development.
    Plant Cell Physiol., 2016. 57(11): p. 2291-2299
    [PMID:27519310]