PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_07375_BGI-A2_v1.0
Common NameF383_13298
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family G2-like
Protein Properties Length: 244aa    MW: 26687.3 Da    PI: 6.5111
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_07375_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like109.51.7e-343993155
                     G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                                kprlrWt eLHerFv+av+qLGG++kAtPkti+++m+vkgLtl+h+kSHLQkYRl
  Cotton_A_07375_BGI-A2_v1.0 39 KPRLRWTAELHERFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRL 93
                                79****************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.1E-333694IPR009057Homeodomain-like
PROSITE profilePS5129413.0953696IPR017930Myb domain
SuperFamilySSF466891.22E-173896IPR009057Homeodomain-like
TIGRFAMsTIGR015571.4E-243994IPR006447Myb domain, plants
PfamPF002496.5E-94192IPR001005SANT/Myb domain
PfamPF143794.2E-27137183IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MYSAIRSLPL NGSVGDYQGS FDGTNLPSDA CLVLTTDPKP RLRWTAELHE RFVDAVTQLG  60
GPDKATPKTI MRTMGVKGLT LYHLKSHLQK YRLGKQSCKE STDNSKDASC VAESLDTGSS  120
TTSSSKLVAQ DLNDGYQVTE ALRVQMEVQR RLHEQLEVQR HLQLRIEAQS KYLQTILEKA  180
CKALSDHVAA SAGLEAAREE LSELGIKISN DCQGMVPFDD IKLPSLPELP AALENKATTT  240
GMPA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A5e-203995258Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B5e-203995258Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A6e-203995157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B6e-203995157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C6e-203995157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D6e-203995157Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A5e-203995258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C5e-203995258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D5e-203995258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F5e-203995258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H5e-203995258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J5e-203995258Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator (PubMed:26586833). Acts redundantly with PHR1 as a key component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). {ECO:0000269|PubMed:26586833}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in roots by low Pi. {ECO:0000269|PubMed:26586833}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5895232e-96JX589523.1 Gossypium hirsutum clone NBRI_GE24244 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012486916.11e-167PREDICTED: myb family transcription factor APL-like
SwissprotQ94A571e-131PHL2_ARATH; Protein PHR1-LIKE 2
TrEMBLA0A0B0N6K81e-180A0A0B0N6K8_GOSAR; Myb family transcription factor APL
STRINGGorai.006G222400.11e-166(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35152561
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13640.11e-125G2-like family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]