PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_05761_BGI-A2_v1.0
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 179aa    MW: 20887.2 Da    PI: 11.1104
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_05761_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.26.1e-18951731698
                                 EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                          B3  16 lvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                                  ++p +f++eh+++   + ++tl+  + +sW+v++i+ + + g   ++ GW+ Fv+ n+Lk+gD++vFk++++++  + v++f
  Cotton_A_05761_BGI-A2_v1.0  95 RSIPESFCDEHMEQ--IPEDVTLKY-KHKSWRVRMIIcSDRAG--RFSIGWRAFVQRNKLKVGDVCVFKMIKKTNIVFEVSIF 172
                                 48*********866..555688776.779******77433333..47889*******************99887777788888 PP

                                 - CS
                          B3  98 r 98 
                                 r
  Cotton_A_05761_BGI-A2_v1.0 173 R 173
                                 7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010195.0E-1079175IPR003340B3 DNA binding domain
PfamPF023622.6E-1595173IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.2E-2096173IPR015300DNA-binding pseudobarrel domain
CDDcd100174.49E-1796173No hitNo description
SuperFamilySSF1019366.67E-1796173IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.23897175IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MFLRWLIRGS ARGSKIGHGR HKRELNARIQ IEYDHSSENE TIRYSKRNKE SHVPRRKIKN  60
GDGKFDEAMQ NKTSARRAIQ RLPSKGTAIA RALERSIPES FCDEHMEQIP EDVTLKYKHK  120
SWRVRMIICS DRAGRFSIGW RAFVQRNKLK VGDVCVFKMI KKTNIVFEVS IFRDGLTLG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012476850.11e-103PREDICTED: B3 domain-containing transcription factor VRN1-like
TrEMBLA0A0D2RAX21e-103A0A0D2RAX2_G
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14804415
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49480.12e-12related to vernalization1 1