PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_05132_BGI-A2_v1.0
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family M-type_MADS
Protein Properties Length: 247aa    MW: 28005.2 Da    PI: 7.0322
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_05132_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF48.88.7e-161150342
                                --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
                      SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                                i ++s r+ t+ kR +g++KK +ELS+LCd++++ i++s+
  Cotton_A_05132_BGI-A2_v1.0 11 ITDDSARKATYKKRTKGLMKKLSELSTLCDIDACSIMYSP 50
                                8899***********************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006615.699149IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.96E-21183IPR002100Transcription factor, MADS-box
SMARTSM004321.5E-21160IPR002100Transcription factor, MADS-box
CDDcd002668.40E-28285No hitNo description
PRINTSPR004044.2E-8323IPR002100Transcription factor, MADS-box
PfamPF003191.5E-161151IPR002100Transcription factor, MADS-box
PRINTSPR004044.2E-82338IPR002100Transcription factor, MADS-box
PRINTSPR004044.2E-83859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MTRKKVKLAY ITDDSARKAT YKKRTKGLMK KLSELSTLCD IDACSIMYSP YESQPEVWPS  60
LMGVQQVLSK LETIPEMEKS KNVLNQESFL SQKTTKAAEQ LKKHCKENWE KEMTHVMFNT  120
ICGKGVVHGL NFEALSEINL LLDKKMNDID KRIDELSKTP LYPQRVSSSS SSSLVALPPM  180
MMVTPEVMLR TGTEDIVQAD VNEMDPMQRH QWIMELISNN NNNPQTHVGG DGMTFQFGEN  240
INPNNGL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11631RKATYKKRTKGLMKKL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017625091.10.0PREDICTED: agamous-like MADS-box protein AGL80
TrEMBLA0A1U8MTZ60.0A0A1U8MTZ6_GOSHI; agamous-like MADS-box protein AGL80
STRINGGorai.004G054700.11e-157(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7028415
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.18e-47AGAMOUS-like 80