PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_05104_BGI-A2_v1.0
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family FAR1
Protein Properties Length: 881aa    MW: 99381.3 Da    PI: 6.5408
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_05104_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR144.93.7e-1463136290
                        FAR1   2 fYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtklel 83 
                                 fY+eYA+++GFs +  + +++ k++g+i+ r+fvC +eg +++                 +C a+++++++  +kw+v+k+++
  Cotton_A_05104_BGI-A2_v1.0  63 FYDEYARRMGFSSKAGHFSSQyKTDGTIVAREFVCGREGLKRSA---------------ESCSAMIRIELK-GEKWVVIKFVK 129
                                 9***************98888799***************98774...............47**********.9********** PP

                        FAR1  84 eHnHela 90 
                                 eH+H+++
  Cotton_A_05104_BGI-A2_v1.0 130 EHSHSVV 136
                                 ****976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.5E-1063136IPR004330FAR1 DNA binding domain
PfamPF105512.0E-26275367IPR018289MULE transposase domain
PROSITE profilePS5096611.016553589IPR007527Zinc finger, SWIM-type
PfamPF044349.4E-10561587IPR007527Zinc finger, SWIM-type
SMARTSM005755.6E-8564591IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009506Cellular Componentplasmodesma
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 881 aa     Download sequence    Send to blast
MDFHVIDSEG GLSHHGMSDD GDAEPSEGGE ANHVENSLAC EEDGISEPYV GMEFNSEDAA  60
RTFYDEYARR MGFSSKAGHF SSQYKTDGTI VAREFVCGRE GLKRSAESCS AMIRIELKGE  120
KWVVIKFVKE HSHSVVSSRK VHYLRPRRHF AGAAKTMADS YQGVGVVPSG MMYVSMDGNH  180
VSMDANNRGI RKTPPAEANC SGKNVGTLNY VLRPVNRKRT LGRDAQNLLD YFKKMQAENP  240
GFFYAIQLDE DNCMANVFWA DARSRTAYMH FGDAVKLDTS YRVNQYRVPF APFTGLNHHG  300
QVILFGCALL FDDSEASFVW LFKTFLTAMN DRRPVSLITD QDRAIQTAMS QVFPGVRHCI  360
NKWHVLREGP EKLTHIFHVH PNFQAELYNC INLTETIEEF ELSWSSIIEK YNLGAHDWLH  420
SLYNARAQWV PVYFRDSFFA AITPNQGFDG SFFDGFVNQQ TTLPIFFRQY ELAIENWFER  480
EIEADFDTIC TTPVLRTPSP MEKQAADLYT RKIFTKFQEE LVETFVYTAN RIEGDGAIST  540
FRVAKYEDVN KVYIVTLNYP EIRANCSCQM FEYSGILCRH ILTVFTVTNV LTLPPHYILK  600
RWTRNAKSGV GTDECGGDLH GQESLASRYN SLCREAIKYA EDGAIATETY NVAMAALNEV  660
GKKVSVVKKT VAKLASPDSL ATGAAYDDKK SSTSAPDTAP SLWPQQDETT RHFNLNDTGT  720
PAQSVSDLNL PRMAPVSLHR DDTHPDNMPV LPCLKSMRWL MENKNSKPGN RLAVIILKLQ  780
DYSNSPSAEM DVKFQLSRIT LEPMLRSMAY ISEQLSTPAN RVAVINLKLQ DTETSTGESE  840
VKFQVSRDTL GAMLRSMAYI REQLSSVCEP QAEPLPKKHR K
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017625959.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 3-like
RefseqXP_017625960.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 3-like
SwissprotQ9ZVC90.0FRS3_ARATH; Protein FAR1-RELATED SEQUENCE 3
TrEMBLA0A1U8N2V40.0A0A1U8N2V4_GOSHI; protein FAR1-RELATED SEQUENCE 3-like
STRINGGorai.004G227400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM11826253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27110.20.0FAR1-related sequence 3
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]