PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_04656_BGI-A2_v1.0
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family TALE
Protein Properties Length: 356aa    MW: 40183.1 Da    PI: 6.5046
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_04656_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.31.5e-09262318255
                                 T--SS--HHHHHHHHHHHH...HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
                    Homeobox   2 rkRttftkeqleeLeelFe...knrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                                 rkR ++ ke  + L +  +   k +yps++++  LA+++gL+++q+ +WF N+R ++
  Cotton_A_04656_BGI-A2_v1.0 262 RKRGKLPKEARQKLLDWWAkhyKWPYPSESQKLALAESTGLDQKQINNWFINQRKRH 318
                                 5555556666666655555222579*****************************885 PP

2ELK41.13.6e-14238259122
                         ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                                 ELK qLlrKYsgyLgsLkqEF+
  Cotton_A_04656_BGI-A2_v1.0 238 ELKGQLLRKYSGYLGSLKQEFM 259
                                 9********************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012552.7E-1999143IPR005540KNOX1
PfamPF037901.7E-21101139IPR005540KNOX1
SMARTSM012562.4E-19148199IPR005541KNOX2
PfamPF037918.5E-17151198IPR005541KNOX2
PROSITE profilePS5121311.174238258IPR005539ELK domain
PfamPF037895.9E-11238259IPR005539ELK domain
SMARTSM011882.8E-8238259IPR005539ELK domain
PROSITE profilePS5007113.41258321IPR001356Homeobox domain
SuperFamilySSF466895.56E-20260331IPR009057Homeodomain-like
SMARTSM003892.2E-14260325IPR001356Homeobox domain
CDDcd000862.98E-16261322No hitNo description
Gene3DG3DSA:1.10.10.603.6E-28263323IPR009057Homeodomain-like
PfamPF059207.2E-17278317IPR008422Homeobox KN domain
PROSITE patternPS000270296319IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009934Biological Processregulation of meristem structural organization
GO:0048440Biological Processcarpel development
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MEGVSNSTSC MMAFGHNSNG LCPMTVMPLT AFHPHDQHQY HHHHNSDFNS LFLPLAPTNN  60
QDQNHNSSSG SSMIIDDQSN TTNNNTGCYF MESNDGSSSS VKAKIMAHPH YHRLVAAYVN  120
CQKVGAPPEV VARLEQVCAS AATMGPSTTG CIGEDPALDQ FMEAYSEMLA KYEQELSKTF  180
KDAMLFLQSV EYQFKALTVS PSNSGDTCGD AVNLNGSSEE EADMNNHHFI DPLAEDRELK  240
GQLLRKYSGY LGSLKQEFMK KRKRGKLPKE ARQKLLDWWA KHYKWPYPSE SQKLALAEST  300
GLDQKQINNW FINQRKRHWK PSEDMQFVVM EATYPHYFMD NILGNPFPMD LSHALL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1253262LKQEFMKKRK
2259266KKRKRGKL
Functional Description ? help Back to Top
Source Description
UniProtPossible transcription activator involved in early embryonic development. Probably binds to the DNA sequence 5'-TGAC-3'.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012444605.10.0PREDICTED: homeobox protein SBH1-like
SwissprotP466081e-145HSBH1_SOYBN; Homeobox protein SBH1
TrEMBLA0A0D2TLX00.0A0A0D2TLX0_GOSRA; Uncharacterized protein
STRINGGorai.009G181500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM64732644
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62360.11e-134KNOX/ELK homeobox transcription factor
Publications ? help Back to Top
  1. Shu Y, et al.
    GmSBH1, a homeobox transcription factor gene, relates to growth and development and involves in response to high temperature and humidity stress in soybean.
    Plant Cell Rep., 2015. 34(11): p. 1927-37
    [PMID:26205508]