PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_04174_BGI-A2_v1.0
Common NameF383_06845, F383_08126
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WRKY
Protein Properties Length: 572aa    MW: 62787.6 Da    PI: 7.2417
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_04174_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY105.72.5e-33234291260
                                 --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                                 dDgynWrKYGqK+vkgse+prsYY+Ct+++Cp+kkkvers  d++++ei+Y+g+Hnh+k
  Cotton_A_04174_BGI-A2_v1.0 234 DDGYNWRKYGQKQVKGSENPRSYYKCTYPNCPTKKKVERSL-DGQITEIVYKGSHNHPK 291
                                 8****************************************.***************85 PP

2WRKY106.81.1e-33406464159
                                 ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                        WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                                 ldDgy+WrKYGqK+vkg+++prsYY+Ct++gCpv+k+ver+++d k+v++tYeg+Hnh+
  Cotton_A_04174_BGI-A2_v1.0 406 LDDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCPVRKHVERASHDLKAVITTYEGKHNHD 464
                                 59********************************************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.4E-28223292IPR003657WRKY domain
SuperFamilySSF1182902.22E-25232292IPR003657WRKY domain
SMARTSM007741.3E-36233291IPR003657WRKY domain
PROSITE profilePS5081123.824234292IPR003657WRKY domain
PfamPF031061.2E-25234290IPR003657WRKY domain
Gene3DG3DSA:2.20.25.807.3E-38391466IPR003657WRKY domain
SuperFamilySSF1182901.28E-29398466IPR003657WRKY domain
PROSITE profilePS5081138.17401466IPR003657WRKY domain
SMARTSM007741.3E-39406465IPR003657WRKY domain
PfamPF031064.7E-26407464IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009753Biological Processresponse to jasmonic acid
GO:0009788Biological Processnegative regulation of abscisic acid-activated signaling pathway
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 572 aa     Download sequence    Send to blast
MASSYDTSAN SFPQNAFGFS THPFMTTSFS DLLASGTTDD DNPSSAVNHG KRGGGLSLSD  60
RIAERTGSGV PKFKSLPPPS LPISPPPVSP SSYFAIPPGL SPAELLDSPV LLNASNILPS  120
PTTGTFPAQA FNWKPSSGNN QQNVKREDKS YTDFSFQTFQ SSTNANQTAQ QQAWSFKESV  180
KEDDFSSGKN MVKSEYNQMQ SFSPEIANIQ NCQSDYTNYQ HQQSQSLRVN RKSDDGYNWR  240
KYGQKQVKGS ENPRSYYKCT YPNCPTKKKV ERSLDGQITE IVYKGSHNHP KPQSTRRSSS  300
SSSSSIAIQA SSAATSEIPD HSFISHGSGH MDSAATPENS SISVGDDDFD RGSQKSKSGG  360
DEFDEDEPDA KRWRGESETE GISAPGSRTV REPRVVVQTT SDIDILDDGY RWRKYGQKVV  420
KGNPNPRSYY KCTHPGCPVR KHVERASHDL KAVITTYEGK HNHDVPAARG SGSHSVNRPL  480
LDNNNNNGAM TIRPSPLNNP MSNNQALRGL RQSTTEGESP FMLEMFQGNG NLGFSGFGNS  540
GGSIMNQHDV NNMFSRTKEE PRDEAFIESL LY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A8e-38234467878Probable WRKY transcription factor 4
2lex_A8e-38234467878Probable WRKY transcription factor 4
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF6698580.0KF669858.1 Gossypium hirsutum WRKY transcription factor 18 (WRKY18) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012471694.10.0PREDICTED: probable WRKY transcription factor 25
SwissprotQ8S8P51e-122WRK33_ARATH; Probable WRKY transcription factor 33
TrEMBLA0A0B0MMY40.0A0A0B0MMY4_G
STRINGGLYMA14G38010.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45832755
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38470.11e-111WRKY DNA-binding protein 33