PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_04055_BGI-A2_v1.0
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bZIP
Protein Properties Length: 255aa    MW: 28329 Da    PI: 9.917
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_04055_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1346.5e-1154106557
                                 CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                      bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkeva 57 
                                 kr++r + NR +A rs +RK  +i eLe+kv++L++e ++L  +l   +    
  Cotton_A_04055_BGI-A2_v1.0  54 KRAKRIIANRQSAARSKERKARYISELERKVQTLQTEATTLSAQLTLFQRDTT 106
                                 9****************************************999877666555 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003386.3E-1750114IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.62252115IPR004827Basic-leucine zipper domain
PfamPF001701.8E-954103IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.36E-1154105No hitNo description
Gene3DG3DSA:1.20.5.1703.2E-1154108No hitNo description
CDDcd147031.09E-2155104No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MSGLSGKGEK NNGGGKGRHR YSNSIDGCSL MESIEAKKAM SPDKLVELWT IDPKRAKRII  60
ANRQSAARSK ERKARYISEL ERKVQTLQTE ATTLSAQLTL FQRDTTGLTT ENTELKLRLQ  120
AMEQQAQLRD ALNEALKKEV ERLKIATGEI TTPTDTFNLG MHHMPYNQSS FFPPQPEHMQ  180
VDTQNIQMPS FHPLRSNMLT PNQSVVTSSN SQAFADIMRQ DPLGRLQGLD ISSRSSHLVK  240
SESPSISAGE SSGTL
Functional Description ? help Back to Top
Source Description
UniProtTranscrition factor that may participate with bZIP34 in the gametophytic control of pollen development. {ECO:0000269|PubMed:27896439}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2144188e-31AC214418.1 Populus trichocarpa clone POP106-D21, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017603797.10.0PREDICTED: transcription factor RF2b-like
SwissprotO228732e-90BZP18_ARATH; bZIP transcription factor 18
TrEMBLA0A1U8J7K90.0A0A1U8J7K9_GOSHI; transcription factor RF2b-like
STRINGGorai.009G293600.11e-163(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40422757
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40620.17e-91bZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Pawar V, et al.
    A novel family of plant nuclear envelope-associated proteins.
    J. Exp. Bot., 2016. 67(19): p. 5699-5710
    [PMID:27630107]
  3. Gibalová A, et al.
    Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte.
    Plant Reprod, 2017. 30(1): p. 1-17
    [PMID:27896439]
  4. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  5. Babiychuk E,Fuangthong M,Van Montagu M,Inzé D,Kushnir S
    Efficient gene tagging in Arabidopsis thaliana using a gene trap approach.
    Proc. Natl. Acad. Sci. U.S.A., 1997. 94(23): p. 12722-7
    [PMID:9356517]