PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_02243_BGI-A2_v1.0
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 157aa    MW: 17141.9 Da    PI: 8.8741
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_02243_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2120.000663355123
                                EEETTTTEEESSHHHHHHHHHHT CS
                     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                                + C+ C+k Fs+   L  H  +H
  Cotton_A_02243_BGI-A2_v1.0 33 FACKTCNKKFSSFQALGGHRASH 55
                                78**********99999998887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.59E-931100No hitNo description
PfamPF139122.5E-113257IPR007087Zinc finger, C2H2
SMARTSM003550.213355IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.3053360IPR007087Zinc finger, C2H2
PROSITE patternPS0002803555IPR007087Zinc finger, C2H2
PfamPF139125.2E-1077102IPR007087Zinc finger, C2H2
SMARTSM003550.578100IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.91278100IPR007087Zinc finger, C2H2
PROSITE patternPS00028080100IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006979Biological Processresponse to oxidative stress
GO:0009408Biological Processresponse to heat
GO:0009611Biological Processresponse to wounding
GO:0009631Biological Processcold acclimation
GO:0009643Biological Processphotosynthetic acclimation
GO:0010200Biological Processresponse to chitin
GO:0010224Biological Processresponse to UV-B
GO:0042538Biological Processhyperosmotic salinity response
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 157 aa     Download sequence    Send to blast
MKRGRDIDAM DMADCLMLLS RVGETDRVAG RVFACKTCNK KFSSFQALGG HRASHKKPKL  60
TVVDNEELAV SPKKPKTHEC SICGLEFAIG QALGGHMRRH RAALNDGLVT RDLLPEMNKS  120
TGDGRDPSID LGLTSWGVDL ELKLGKVTPT PVVHCFI
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012471399.11e-110PREDICTED: zinc finger protein ZAT12
SwissprotQ424106e-37ZAT12_ARATH; Zinc finger protein ZAT12
TrEMBLA0A0D2RM651e-109A0A0D2RM65_G
STRINGVIT_06s0004g04180.t013e-50(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM53128150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59820.13e-38C2H2 family protein