PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_01649_BGI-A2_v1.0
Common NameF383_19449
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family TALE
Protein Properties Length: 671aa    MW: 73061 Da    PI: 7.1967
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_01649_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.72.2e-094655021954
                                 HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
                    Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                                 Fe   ++yps +++  LA+++gL+ +qV++WF N R +
  Cotton_A_01649_BGI-A2_v1.0 465 FEHflHPYPSDADKHLLARQTGLSRNQVSNWFINARVR 502
                                 664559******************************88 PP

2BELL114.17.2e-37324396172
                        BELL   1 erqelqkkkakLlslleeV.dkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                                 +r e+q++k+kLls+l+e  d+rY++y+eq+qtv++sF+ v+g+g+a pYt+lA+ka+SrhFrcLkdai++q+
  Cotton_A_01649_BGI-A2_v1.0 324 DRIEHQRRKVKLLSMLDEAcDRRYNHYCEQMQTVVNSFDLVMGYGAAIPYTALAQKAMSRHFRCLKDAISSQL 396
                                 589*************9962789***********************************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005747.2E-73254394IPR006563POX domain
PfamPF075263.9E-47259393IPR006563POX domain
PROSITE profilePS5007112.455443506IPR001356Homeobox domain
CDDcd000861.09E-12446507No hitNo description
SMARTSM003891.2E-9446510IPR001356Homeobox domain
SuperFamilySSF466892.78E-17447513IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.7E-29449512IPR009057Homeodomain-like
PfamPF059203.3E-18463502IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 671 aa     Download sequence    Send to blast
HHQAAAGIFS FSNGFERSAI NHQEQQQQLV QQIRRDKLRV QGFEPPPPPL VGIEEEESNA  60
LPVYESTGML SSEMFYFPSS VTVTAASTEL LDQSLQANYR GQLGESKNDR DSLAQQQQLP  120
SINADSAAAM HLFLMNPQTR SPSPPPPQPQ PPPRGFHGGA FPPQFTWVPD NSHEGGHGQG  180
QGQGLSLSLS SLQHLEAAKL YYNQGGATGG ADGGGGSSAT ATAQFQYKHD HHSPHQPLGL  240
VQNHQVHVGY NSSLGMVNVL RNSKYTKLAQ ELLEEFCSVG SGRFKKKKLG KNNINPSSNP  300
SNDGTTTNGS SSSTKDLPPF SASDRIEHQR RKVKLLSMLD EACDRRYNHY CEQMQTVVNS  360
FDLVMGYGAA IPYTALAQKA MSRHFRCLKD AISSQLKHSC ELLGEKDGVG TSGITKGETP  420
RLRMLEQSLR QQKAFHQIGM MEHEAWRPQR GLPERSVNIL RAWLFEHFLH PYPSDADKHL  480
LARQTGLSRN QVSNWFINAR VRLWKPMVEE MYQQESKEGG DNNKGTRTNN NAAQTSTPST  540
TAVGGAGGAS PPPQPPENDP SLIGTNTTQC FSENQLTNTG TSTTNTSTAT EVTPPVSDSD  600
IHQRLLAVTD DTCHRGSNNI VGTITADNTD IGSTLIRFGT TGGDVSLTLG LRHPGNMPDK  660
ASSFSVTNFG G
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A2e-16452510563Homeobox protein Meis2
3k2a_B2e-16452510563Homeobox protein Meis2
4xrm_A2e-16452510563Homeobox protein Meis2
4xrm_B2e-16452510563Homeobox protein Meis2
4xrs_A2e-16452509158Homeobox protein Meis1
4xrs_B2e-16452509158Homeobox protein Meis1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that establishes leaf shape by repressing growth in specific subdomains of the leaf. Negatively regulates knox homeobox gene KNAT1/BP expression. {ECO:0000269|PubMed:17873098}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6225440.0JX622544.1 Gossypium hirsutum clone NBRI_GE69320 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017634650.10.0PREDICTED: BEL1-like homeodomain protein 4
SwissprotQ94KL51e-155BLH4_ARATH; BEL1-like homeodomain protein 4
TrEMBLA0A0B0NSA10.0A0A0B0NSA1_GOSAR; BEL1-like homeodomain protein 2
STRINGGorai.003G018100.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21662466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36870.21e-140BEL1-like homeodomain 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]