PlantTFDB
Plant Transcription Factor Database
PlantRegMap/PlantTFDB v5.0
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_00996_BGI-A2_v1.0
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family LBD
Protein Properties Length: 172aa    MW: 19300 Da    PI: 7.4344
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_00996_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260126.11.7e-3911109199
                      DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilkl 83 
                                 +CaaCk+l+r+C+++C++apyf ++++kkfa vhk+FGasnv+k+l ++pee+red+++sl++eAear+rdPv+G++g i  l
  Cotton_A_00996_BGI-A2_v1.0  11 SCAACKLLKRRCSPNCIFAPYFRSDEAKKFAKVHKVFGASNVSKILVEVPEEQREDTVNSLAFEAEARLRDPVHGCIGAIALL 93 
                                 6********************************************************************************** PP

                      DUF260  84 qqqleqlkaelallke 99 
                                 q+++ ql+++lal+++
  Cotton_A_00996_BGI-A2_v1.0  94 QRKMIQLQHDLALARA 109
                                 ***********99875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.25610111IPR004883Lateral organ boundaries, LOB
PfamPF031955.0E-3911108IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MRGHEPRSTS SCAACKLLKR RCSPNCIFAP YFRSDEAKKF AKVHKVFGAS NVSKILVEVP  60
EEQREDTVNS LAFEAEARLR DPVHGCIGAI ALLQRKMIQL QHDLALARAC LARYVATPSV  120
IFSSDDHHRV ITGPFDDFPV DCGVSFGSFN QNISYELNQE ANMYDFSQIP YI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-4361146114LOB family transfactor Ramosa2.1
5ly0_B3e-4361146114LOB family transfactor Ramosa2.1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017618826.11e-127PREDICTED: LOB domain-containing protein 21
RefseqXP_017621588.11e-127PREDICTED: LOB domain-containing protein 21-like
SwissprotQ9SRL82e-63LBD21_ARATH; LOB domain-containing protein 21
TrEMBLA0A1U8KNB21e-125A0A1U8KNB2_GOSHI; LOB domain-containing protein 21-like
TrEMBLA0A2P5XEG61e-125A0A2P5XEG6_GOSBA; Uncharacterized protein
STRINGGorai.013G016900.11e-120(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM102552735
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11090.17e-66LOB domain-containing protein 21
Publications ? help Back to Top
  1. Weber AP,Weber KL,Carr K,Wilkerson C,Ohlrogge JB
    Sampling the Arabidopsis transcriptome with massively parallel pyrosequencing.
    Plant Physiol., 2007. 144(1): p. 32-42
    [PMID:17351049]