PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_00766_BGI-A2_v1.0
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 128aa    MW: 14855.2 Da    PI: 10.4295
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_00766_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B350.34.4e-1616109194
                                 EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT CS
                          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkeg 77 
                                 f k+lt  dv    r+++p   ++eh    +g+  +s + +++d+ +++W+++l  rk++g+   vltkGW +Fv   gLk+g
  Cotton_A_00766_BGI-A2_v1.0  16 FSKILTATDVRV--RFSFPTATMREHfkllEGS--QSLDFQVRDKYSKVWTFRLYTRKNDGHpkPVLTKGWLDFVTRMGLKVG 94 
                                 667777777765..47***********977555..7889***************6688888899******************* PP

                                 -EEEEEE-SSSEE..EE CS
                          B3  78 DfvvFkldgrsefelvv 94 
                                 D v+F ++g+++ +  +
  Cotton_A_00766_BGI-A2_v1.0  95 DKVIFVVHGNHNDH--L 109
                                 ******98886663..3 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.6E-2112115IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.41E-1915116IPR015300DNA-binding pseudobarrel domain
CDDcd100171.25E-161599No hitNo description
SMARTSM010195.6E-916115IPR003340B3 DNA binding domain
PfamPF023628.5E-1316107IPR003340B3 DNA binding domain
PROSITE profilePS508639.78453115IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 128 aa     Download sequence    Send to blast
MHMQSSESEP GMKELFSKIL TATDVRVRFS FPTATMREHF KLLEGSQSLD FQVRDKYSKV  60
WTFRLYTRKN DGHPKPVLTK GWLDFVTRMG LKVGDKVIFV VHGNHNDHLG ILVKRNIKLL  120
GSEHWADL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012481135.17e-87PREDICTED: B3 domain-containing protein Os02g0764100-like
TrEMBLA0A0D2PY986e-84A0A0D2PY98_G
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17815410
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19850.12e-09ARF family protein