PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_00211_BGI-A2_v1.0
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 133aa    MW: 15939.7 Da    PI: 9.5221
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_00211_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B332.71.3e-1021941283
                                HTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTE...EEE-TTHHHHHHHHT--TT-EEEEE CS
                          B3 12 ksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgr...yvltkGWkeFvkangLkegDfvvFk 83
                                ++ rl++p + +  +       ++ ++l+++d+s  +W++++i   ++g     v++kGW eFv a+gLk+ D +v +
  Cotton_A_00211_BGI-A2_v1.0 21 ER-RLSVPTRILYLFpytT-TDHRCFDLQVKDTSDVVWSFRCIR--RDGVyakPVFSKGWLEFVYAKGLKAYDKIVVY 94
                                33.4788887774446642.334679****************54..33333459*******************99988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.109.7E-13897IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-11995IPR015300DNA-binding pseudobarrel domain
CDDcd100175.62E-121098No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 133 aa     Download sequence    Send to blast
MKHRLHMELI FSKLLTQTDI ERRLSVPTRI LYLFPYTTTD HRCFDLQVKD TSDVVWSFRC  60
IRRDGVYAKP VFSKGWLEFV YAKGLKAYDK IVVYKEKGVV EGDVPYRIEV KRKILRLMGE  120
DIWIEIEHLH LYS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012468593.11e-86PREDICTED: uncharacterized protein LOC105786621
TrEMBLA0A0D2QYA72e-90A0A0D2QYA7_G
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2206034