PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna32629.1-v1.0-hybrid
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family bZIP
Protein Properties Length: 337aa    MW: 37040.9 Da    PI: 7.1938
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna32629.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_127.47.3e-09180237562
                              CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                   bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 
                              kr++r   NR +A rs +RK  +  eLe+kv++L++e ++L  ++  l+    + ++e
  mrna32629.1-v1.0-hybrid 180 KRAKRILANRQSAARSKERKVRYANELERKVQTLQTEATTLSAQVTLLQRDTTAITAE 237
                              9*****************************************9999998777666665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003389.7E-15176240IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.967178241IPR004827Basic-leucine zipper domain
PfamPF001701.0E-7180227IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1703.4E-10180231No hitNo description
SuperFamilySSF579592.67E-10180231No hitNo description
CDDcd147035.57E-23181230No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007231Biological Processosmosensory signaling pathway
GO:0008272Biological Processsulfate transport
GO:0009294Biological ProcessDNA mediated transformation
GO:0009652Biological Processthigmotropism
GO:0009970Biological Processcellular response to sulfate starvation
GO:0045596Biological Processnegative regulation of cell differentiation
GO:0051170Biological Processnuclear import
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003682Molecular Functionchromatin binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0043621Molecular Functionprotein self-association
GO:0051019Molecular Functionmitogen-activated protein kinase binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009001anatomyfruit
PO:0007010developmental stagewhole plant fruit ripening stage
PO:0007027developmental stagewhole plant fruit formation stage 70% to final size
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MEMDSNNHSF SSPTSSNDIE QMPETPHRGG SYHRRAHSDF SSFRLPNFDD LLLFDPSDLD  60
LSSFPSPVPP RGATSTSSAA VPMPIDDSDD SSASRPRPSS SATAAHFRSL SVDSDFFDGL  120
GFSGDAVSGK EVVGGKRPGA GGHRHSNSMD GSFDSELSLD GLKKSITPDK LAELSLIDPK  180
RAKRILANRQ SAARSKERKV RYANELERKV QTLQTEATTL SAQVTLLQRD TTAITAENKE  240
LKIRLQAMEQ QAQLRDALNE KLKEEVERLK IETNQTPLGN GNPFYRGLPR QYAAPQSAMH  300
NQLGGSQSQH QQLHMRHNQN VNGQSHPSFM DFNQRA*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00184DAPTransfer from AT1G43700Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004292529.10.0PREDICTED: transcription factor VIP1
SwissprotQ9MA752e-85VIP1_ARATH; Transcription factor VIP1
TrEMBLM5W6S21e-144M5W6S2_PRUPE; Uncharacterized protein
STRINGVIT_18s0076g00330.t011e-102(Vitis vinifera)
STRINGPOPTR_0005s21300.11e-102(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF52143450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G43700.16e-69VIRE2-interacting protein 1