PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna31986.1-v1.0-hybrid
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family WOX
Protein Properties Length: 193aa    MW: 22102.1 Da    PI: 8.7803
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna31986.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox27.94e-0984121238
                              T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHCT CS
                 Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkklg 38 
                              r+R+t++++qle+Le+ +++ n +p +++ +e++k+l+
  mrna31986.1-v1.0-hybrid  84 RQRWTPSNTQLEILERIYNEaNGTPGKQRVKEITKELS 121
                              89*****************99**************994 PP

2Wus_type_Homeobox48.91.6e-1683125244
        Wus_type_Homeobox   2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGk 44 
                              ar+RWtP+++Q++iLe++y+++  tP k+++++it+eL+++G+
  mrna31986.1-v1.0-hybrid  83 ARQRWTPSNTQLEILERIYNEANGTPGKQRVKEITKELSQHGQ 125
                              789***************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-680135IPR009057Homeodomain-like
SuperFamilySSF466891.41E-583130IPR009057Homeodomain-like
PfamPF000468.9E-784121IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MEGQRRVLAM KLERPRTQNQ DGFCVMTEDQ VEQLRKQIAV YAVICEQLVD THKAFTAQQD  60
LAGMKMGNVY GDSMAFGGNK VTARQRWTPS NTQLEILERI YNEANGTPGK QRVKEITKEL  120
SQHGQNQIVS PKDKRQNLKT CSFEVLIQHV PYGWEWQVYV DDMPTESYEF TGAVEVSKKP  180
YQGGSRRRRV EI*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna31986.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011465634.13e-88PREDICTED: WUSCHEL-related homeobox 8-like
SwissprotQ5QMM35e-41WOX8_ORYSJ; WUSCHEL-related homeobox 8
TrEMBLA0A2P6PBJ93e-70A0A2P6PBJ9_ROSCH; Putative transcription factor Homobox-WOX family
STRINGXP_004300839.11e-84(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18553493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35550.11e-41WUSCHEL related homeobox 13
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]