PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna30099.1-v1.0-hybrid
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family Trihelix
Protein Properties Length: 490aa    MW: 55596 Da    PI: 6.5886
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna30099.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix74.81.5e-23109209186
                 trihelix   1 rWtkqevlaLiearremeerlrrgk..............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr. 71 
                              +Wt+ +v++Li a+ +++++  +++              +kk++W++vs++m+e+gf +sp+qC++k+++lnkryk+++++ +k+ 
  mrna30099.1-v1.0-hybrid 109 KWTDTMVRLLIMAVFYIGDEGVSECpdptgkkkngggllQKKGKWKSVSRAMMEKGFYVSPQQCEDKFNDLNKRYKRVNDILGKGt 194
                              7****************9999988788888899999999**********************************************5 PP

                 trihelix  72 tsessstcpyfdqle 86 
                              +++++++  +++++e
  mrna30099.1-v1.0-hybrid 195 ACKVVENQGLLEKME 209
                              599999999999997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138374.3E-22107234No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010629Biological Processnegative regulation of gene expression
GO:1900037Biological Processregulation of cellular response to hypoxia
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 490 aa     Download sequence    Send to blast
MEGNGLGGGL FPEMRSGMLG LEMPLHQTQN PQNPQNPHHH MHQPQMVSYA HHEADLNHHP  60
QAQQSVKHGY PYAAKPKQIT LSDEDEPGFG ADDSAGDNKR KISPWQRMKW TDTMVRLLIM  120
AVFYIGDEGV SECPDPTGKK KNGGGLLQKK GKWKSVSRAM MEKGFYVSPQ QCEDKFNDLN  180
KRYKRVNDIL GKGTACKVVE NQGLLEKMEL SSKMKEEVKK LLNSKHLFFR EMCAYHNSCG  240
HGTVGAAGAS GAHNSSPEMA TDQSQVQLQR QSQQQRCFHV SENAHVVANS GRSETEGSKM  300
LKAESGGEDE DEVDYEDDDS EDDDEEEEEG VVEGGPRSQI GHVHEDGDEN DHERAKRPRK  360
GSCFSGPSMK MLMQQLTSEV NGVIQDASKT PWEKKQWMKR RLIQLEEQQV SYRYQSFELE  420
KQRLKWVKYS SKKERDMERA KLENEGRRLE NERMLLLVRQ KELELLDLHH QHPQQNSSNK  480
RSDPSSLTG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna30099.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011466806.10.0PREDICTED: uncharacterized protein LOC101312168
TrEMBLA0A2P6RBE10.0A0A2P6RBE1_ROSCH; Putative transcription factor Trihelix family
STRINGXP_004303047.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF48203457
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10040.14e-60sequence-specific DNA binding transcription factors