PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna25548.1-v1.0-hybrid
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family GRAS
Protein Properties Length: 552aa    MW: 60864.8 Da    PI: 5.8808
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna25548.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS260.36.8e-801585442374
                     GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn....sseelaalkl 83 
                              ++lL  cA a++ g+l+++q+lL  l+elas +gd+++Rlaa+ ++AL ++l++++s  ++a ++s++  +     s+e  +++k 
  mrna25548.1-v1.0-hybrid 158 EQLLNPCASAITGGNLTRVQHLLYVLHELASLTGDANHRLAAHGLRALTHHLSSNSS--SSAPNASASVGNVvtfpSTEPRFFQKS 241
                              689**************************************************9332..222333333222233554444444444 PP

                     GRAS  84 ...fsevsPilkfshltaNqaIleavege....ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesg........ 153
                                 f+evsP++ f + +aN+aIl+ ++ e    +++Hi+D+++s+G+QWp+Ll+aL+ R+ ++pp ++iT++g+++ +        
  mrna25548.1-v1.0-hybrid 242 llkFYEVSPWFAFPNNIANSAILQVLADEpnraSTLHIVDIGVSHGMQWPTLLEALTRRSgGPPPLVKITVIGASTVEndqnseap 327
                              577***********************9999888899************************55666********9776677776666 PP

                     GRAS 154 ..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPk 237
                                      ++  rL  fA+++++++++n l  ++l++l+ + ++ +++E+l+V+l+++lh+l +++ + e  r+e+L+++++++P+
  mrna25548.1-v1.0-hybrid 328 fsIGPLGDNYSARLLGFAKSMNINLQINRLDNQSLQTLNSQVIDASSDETLIVCLQFRLHQLNHNTPPGE--RTEFLSILRNMEPN 411
                              644445578999*****************9999*****************************96666655..5************* PP

                     GRAS 238 vvvvveqeadh..ns.esFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerle 320
                               v+++e+++++  ns ++F+++f++ +ey + ++ds++a +    + r + Er++++ e+ ++++++g++    +e +ekW er++
  mrna25548.1-v1.0-hybrid 412 GVILSENNMECscNScGDFATGFSRQVEYLWRFLDSTSAAF----KGRESEERRVMEGEAAKALTNRGEM----NEGKEKWCERMK 489
                              *******97764354259*******************8876....7777777777888899999999998....9*********** PP

                     GRAS 321 eaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                               +GF    ++e+a +  + llrk++ ++++rv+e++g++ l Wk++p+ ++S W+
  mrna25548.1-v1.0-hybrid 490 GVGFVGEGFGEDAIDGGRGLLRKYDsNWEMRVDEKDGCAGLWWKGQPVSFCSLWK 544
                              *************************9999*************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098538.274131523IPR005202Transcription factor GRAS
PfamPF035142.3E-77158544IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042446Biological Processhormone biosynthetic process
GO:2000032Biological Processregulation of secondary shoot formation
Sequence ? help Back to Top
Protein Sequence    Length: 552 aa     Download sequence    Send to blast
MITNEVPQPN PTSEQILDWL EDSVSFFPSF LDDPYHSNDY QWWEESQDLI HTNSNSLTNN  60
ANIVVAEDPV DSITQLPPSE ASKKRKSPDD PVSETSSHID RKANTGRHVN KVEKDIKKAI  120
DEVAAQPAKR TNNNKKGTGK GTGNNCNNGN SKEGRWAEQL LNPCASAITG GNLTRVQHLL  180
YVLHELASLT GDANHRLAAH GLRALTHHLS SNSSSSAPNA SASVGNVVTF PSTEPRFFQK  240
SLLKFYEVSP WFAFPNNIAN SAILQVLADE PNRASTLHIV DIGVSHGMQW PTLLEALTRR  300
SGGPPPLVKI TVIGASTVEN DQNSEAPFSI GPLGDNYSAR LLGFAKSMNI NLQINRLDNQ  360
SLQTLNSQVI DASSDETLIV CLQFRLHQLN HNTPPGERTE FLSILRNMEP NGVILSENNM  420
ECSCNSCGDF ATGFSRQVEY LWRFLDSTSA AFKGRESEER RVMEGEAAKA LTNRGEMNEG  480
KEKWCERMKG VGFVGEGFGE DAIDGGRGLL RKYDSNWEMR VDEKDGCAGL WWKGQPVSFC  540
SLWKTGNQHK L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A5e-1718554425375GRAS family transcription factor containing p
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011457863.10.0PREDICTED: nodulation-signaling pathway 1 protein
SwissprotQ4VYC80.0NSP1_MEDTR; Nodulation-signaling pathway 1 protein
TrEMBLM5X9410.0M5X941_PRUPE; Uncharacterized protein
STRINGVIT_09s0002g01190.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68743447
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13840.11e-161GRAS family protein