PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna24658.1-v1.0-hybrid
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family GeBP
Protein Properties Length: 398aa    MW: 42903.9 Da    PI: 8.3786
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna24658.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573111.36.4e-35170261197
                   DUF573   1 klfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdq 86 
                              klfqrlws+eDei++L+G+ d+++k+g++p++d+ af+ef+kks++++vsk ql +Kirr+KkKf+++v+k     + + +k+h++
  mrna24658.1-v1.0-hybrid 170 KLFQRLWSDEDEIIILKGMNDYATKKGVDPYADMGAFHEFIKKSLKVDVSKIQLQDKIRRMKKKFENNVRK-----KHEPTKPHEN 250
                              579*******************************************************************9.....56679***** PP

                   DUF573  87 kifelskkiWg 97 
                              k++elskk+Wg
  mrna24658.1-v1.0-hybrid 251 KTYELSKKVWG 261
                              **********8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045042.8E-30172261IPR007592Protein of unknown function DUF573
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0005829Cellular Componentcytosol
GO:0009507Cellular Componentchloroplast
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MAPKRPSPLD EPPAASSSEE EQEASSEEAA SGSGSEESES ETEASEPPKT TSTAKPQPKK  60
PESAAAAKPQ SSSSGETETD SESESDGENL GNSKVHVKPI ASKPMEAVTP PPKATKPRSK  120
PAASPATAKS GTKRPNGGES ELNKDSKKAK KKGDDQEEDG VEEESSKKSK LFQRLWSDED  180
EIIILKGMND YATKKGVDPY ADMGAFHEFI KKSLKVDVSK IQLQDKIRRM KKKFENNVRK  240
KHEPTKPHEN KTYELSKKVW GGGEDLGGKT EQPKANGKAK AKSNQKGNSK TLASMKADLL  300
ASPEPSKDAE KSGAFLKRGA SGSVSSEVIG FDKGFKELGL SETIVQQGLE LIGGSKCAAL  360
KDKWNELHVA ELELFVKRTE LMRNQAQMIL EAIKSDH*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1228240RMKKKFENNVRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna24658.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004309669.10.0PREDICTED: mediator-associated protein 1
TrEMBLA0A2P6Q3171e-165A0A2P6Q317_ROSCH; Putative transcription factor GeBP family
STRINGXP_004309669.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18313490
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61730.17e-28DNA-binding storekeeper protein-related transcriptional regulator