PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna23617.1-v1.0-hybrid
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family Trihelix
Protein Properties Length: 434aa    MW: 48965 Da    PI: 6.5402
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna23617.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix95.64.5e-30115200187
                 trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 
                              rW++qe+l+L+e+r++++++++++++k+plW+evs+ m +e+g++rs k+Ckek+enl k+ykk+keg+ +r  ++ +++++f+ql
  mrna23617.1-v1.0-hybrid 115 RWPRQETLTLLEIRSSLDSKFKETNQKGPLWDEVSRIMsEEHGYQRSGKKCKEKFENLYKYYKKTKEGKAGR--QDGKHYRFFRQL 198
                              8*************************************999*****************************98..55667******* PP

                 trihelix  86 ea 87 
                              ea
  mrna23617.1-v1.0-hybrid 199 EA 200
                              85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.713108173IPR017877Myb-like domain
CDDcd122032.56E-23114180No hitNo description
PfamPF138376.0E-21114201No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 434 aa     Download sequence    Send to blast
MDDYPDLRQL MASRTQQFVQ FPDPFSVRPF NNYNPNSSVA VGQEVNTRGL FEFGSAASAP  60
PSFSTIISNT SVAANLNGST AGSSVGSLYG GLELMNHQHG WSINGNDGSA GNNSRWPRQE  120
TLTLLEIRSS LDSKFKETNQ KGPLWDEVSR IMSEEHGYQR SGKKCKEKFE NLYKYYKKTK  180
EGKAGRQDGK HYRFFRQLEA IYGDRSTNPL CSTSDQTNLT GTLNPSLLYN HTTAAINNQE  240
YQEVKLGAES LSFSNNSTDM ETSTSENNGD DLSNSANENQ RCSRGVKKTW KAHVEEFVNS  300
QMMKVMKAQE GWMEKMLKTI EGREEERFSK EEEWRKREEE RFKQQVDEFW AKERAWVETR  360
DASIMEAVGK IRGMGTNSYN NKAKDENTGG QQLMGGGLVP SSSNYMNMES SSLYIPTNEA  420
ENLWNRYGGK LSK*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that prevents growth. Regulates perianth architecture in flower, mostly in the second whorl, probably by suppressing growth between initiating sepals, ensuring that they remain separate, and by modulating organ shapes. Required for the establishment of auxin flux. {ECO:0000269|PubMed:10572040, ECO:0000269|PubMed:15269176, ECO:0000269|PubMed:18080804}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna23617.1-v1.0-hybrid
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Expression within the newly arising sepals is repressed via the PINOID auxin-response pathway. {ECO:0000269|PubMed:15269176}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004308550.10.0PREDICTED: trihelix transcription factor PTL-like
SwissprotQ9LZS05e-82PTL_ARATH; Trihelix transcription factor PTL
TrEMBLA0A2P6SC080.0A0A2P6SC08_ROSCH; Putative transcription factor MYB family
STRINGXP_004308550.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20223489
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03680.14e-72Trihelix family protein
Publications ? help Back to Top
  1. Quon T,Lampugnani ER,Smyth DR
    PETAL LOSS and ROXY1 Interact to Limit Growth Within and between Sepals But to Promote Petal Initiation in Arabidopsis thaliana.
    Front Plant Sci, 2017. 8: p. 152
    [PMID:28228771]