PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna22584.1-v1.0-hybrid
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family NF-YC
Protein Properties Length: 268aa    MW: 29614.4 Da    PI: 6.3399
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna22584.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC176.72.3e-55811841101
                    NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaav 83 
                              ql++fw+ q   iek+tdfknh+lPlarikki+kadedv+misaeaPv++++ace+fileltlrsw+h+eenkrrtl+k+diaaa+
  mrna22584.1-v1.0-hybrid  81 QLQNFWAGQfqeIEKVTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAI 166
                              89****9988889************************************************************************* PP

                    NF-YC  84 trtdifdflvdivprdel 101
                              trtdifdflvdivpr++l
  mrna22584.1-v1.0-hybrid 167 TRTDIFDFLVDIVPREDL 184
                              ***************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471134.36E-3368175IPR009072Histone-fold
PfamPF008081.7E-21103166IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.101.1E-37104181IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0046982Molecular Functionprotein heterodimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009005anatomyroot
PO:0007134developmental stagesporophyte vegetative stage
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MDQQGHGQPQ SMGMVGSGAQ MAYGTAPYQH TQMVGSPNPA TVGAPVGGIQ ASNQSAGAQL  60
AQHQLAYQHI HQQQQQQLQQ QLQNFWAGQF QEIEKVTDFK NHSLPLARIK KIMKADEDVR  120
MISAEAPVIF ARACEMFILE LTLRSWNHTE ENKRRTLQKN DIAAAITRTD IFDFLVDIVP  180
REDLKDEVLA SIPRGTVSVG AADALPPYCY MPPQHGPQVG APGMIMGKPM MDPSMYGQQS  240
HPYMGPQMWS QAPDQQQQQQ QQSPSDH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1n1j_B7e-4191181597NF-YC
4awl_C6e-4191181294NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT GAMMA
4csr_B6e-4191181294NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT GAMMA
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1153159RRTLQKN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004302444.10.0PREDICTED: nuclear transcription factor Y subunit C-9
SwissprotQ8L4B22e-88NFYC9_ARATH; Nuclear transcription factor Y subunit C-9
TrEMBLM5W0Q01e-156M5W0Q0_PRUPE; Uncharacterized protein
STRINGVIT_14s0128g00250.t011e-135(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF125734108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08970.42e-85nuclear factor Y, subunit C9