PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna22114.1-v1.0-hybrid
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family ERF
Protein Properties Length: 373aa    MW: 40638.1 Da    PI: 6.1741
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna22114.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.31.2e-20172221255
                      AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                               y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a+++a+ kl+g
  mrna22114.1-v1.0-hybrid 172 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEEAALAYDKAAYKLRG 221
                              59******9.**********965...5*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.11E-33171231No hitNo description
Gene3DG3DSA:3.30.730.102.6E-32172230IPR001471AP2/ERF domain
PROSITE profilePS5103223.143172229IPR001471AP2/ERF domain
SMARTSM003802.7E-37172235IPR001471AP2/ERF domain
SuperFamilySSF541712.75E-23172230IPR016177DNA-binding domain
PRINTSPR003673.7E-11173184IPR001471AP2/ERF domain
PfamPF008473.8E-14173221IPR001471AP2/ERF domain
PRINTSPR003673.7E-11195211IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0009611Biological Processresponse to wounding
GO:0009736Biological Processcytokinin-activated signaling pathway
GO:0009873Biological Processethylene-activated signaling pathway
GO:0010017Biological Processred or far-red light signaling pathway
GO:0045595Biological Processregulation of cell differentiation
GO:0071472Biological Processcellular response to salt stress
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009005anatomyroot
PO:0007134developmental stagesporophyte vegetative stage
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MAAMDFYSSI PLQSSSDPFT GELMEALEPF MKSASPPPPL SSSSFDFNPS IPTPSSSYSS  60
SPTPFLPSTS SPSSSYDYLS FSPSIPTPQP GLFQDGCSTF NMGFEQQGSI GLNHLTSSQI  120
HQIQTQFQFQ NQPQMAWQQS YQQPQPSHTL SFLSPKPVPM KQSGSPPKPT KLYRGVRQRH  180
WGKWVAEIRL PKNRTRLWLG TFDTAEEAAL AYDKAAYKLR GDFARLNFPH LKHTGSVVGG  240
EFGEYKPLHS SVDAKLQAIC EGLAESQKQG KAGKQAGGAK KSSAARTKPK STPVPEPEPE  300
PEALTVKEET SSLSPVRTDS DGSAGSSPLS DLTFADYSES SSPWENNGSE SYLLEKYPSE  360
IDWASIFNQN SN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-21171229160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00026PBMTransfer from AT1G78080Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna22114.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL0226057e-32AL022605.3 Arabidopsis thaliana DNA chromosome 4, BAC clone T19P19 (ESSA project).
GenBankAL1615957e-32AL161595.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 91.
GenBankAY5608507e-32AY560850.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At4g39780) mRNA, complete cds.
GenBankBT0257197e-32BT025719.1 Arabidopsis thaliana At4g39780 mRNA, complete cds.
GenBankCP0026877e-32CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004299631.10.0PREDICTED: ethylene-responsive transcription factor RAP2-4
SwissprotQ8H1E42e-87RAP24_ARATH; Ethylene-responsive transcription factor RAP2-4
TrEMBLA0A3Q8TB030.0A0A3Q8TB03_FRAAN; Transcription factor ERF5
STRINGXP_004299631.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF105732109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78080.12e-63related to AP2 4
Publications ? help Back to Top
  1. Pati A,Vasquez-Robinet C,Heath LS,Grene R,Murali TM
    XcisClique: analysis of regulatory bicliques.
    BMC Bioinformatics, 2006. 7: p. 218
    [PMID:16630346]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Iwase A, et al.
    WIND1-based acquisition of regeneration competency in Arabidopsis and rapeseed.
    J. Plant Res., 2015. 128(3): p. 389-97
    [PMID:25810222]
  4. Ikeuchi M, et al.
    PRC2 represses dedifferentiation of mature somatic cells in Arabidopsis.
    Nat Plants, 2015. 1: p. 15089
    [PMID:27250255]
  5. Iwase A, et al.
    WIND1 Promotes Shoot Regeneration through Transcriptional Activation of ENHANCER OF SHOOT REGENERATION1 in Arabidopsis.
    Plant Cell, 2017. 29(1): p. 54-69
    [PMID:28011694]