PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna20347.1-v1.0-hybrid
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family HSF
Protein Properties Length: 483aa    MW: 54848.1 Da    PI: 7.4567
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna20347.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind111.75.2e-351652562102
                              HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXX CS
             HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFk 87 
                              Fl+k+y++++d+++++++sws+ g sfvv+d++++  ++Lp+yFkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F 
  mrna20347.1-v1.0-hybrid 165 FLNKTYDMVDDPSTNRIVSWSRAGGSFVVWDPHSLVMNLLPRYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFL 241
                              9****************************************************************999.........********* PP

                              XXXXXXXXXXXXXXX CS
             HSF_DNA-bind  88 kgkkellekikrkks 102
                              +g+k+ll++i+r+k+
  mrna20347.1-v1.0-hybrid 242 RGQKHLLKNIRRRKT 256
                              *************86 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467851.09E-34161254IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.0E-61161254IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.107.9E-38161254IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.6E-31165254IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.8E-20165188IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.8E-20203215IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340204228IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.8E-20216228IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009005anatomyroot
PO:0007134developmental stagesporophyte vegetative stage
Sequence ? help Back to Top
Protein Sequence    Length: 483 aa     Download sequence    Send to blast
MARLINATHH VVLDIVVQTQ SAATRDTPIY VIATNSRYNM HHRVLRHSPC QESNAGAQPH  60
CLSEMSQKHQ NHLDQEQHRA RPPWRTLERV WIRIVTWKQA SKAALPEPGL IEVSPDKFGC  120
KIRTKTVKEE YPGDSSTSQY WSGDPLVVAP PQPMEGLNDT GPPPFLNKTY DMVDDPSTNR  180
IVSWSRAGGS FVVWDPHSLV MNLLPRYFKH NNFSSFVRQL NTYGFRKVDP DRWEFANEGF  240
LRGQKHLLKN IRRRKTPSHQ PIPPHQAVGP CVEVGRFGLD GEIDRLRRDK QVLMMELVKL  300
RQQQQSTRAC LQAMEQRLQG TERKQQQMMA FLARAMQNPA FLQQLVQHKE KRKELEGAVT  360
KKRRRPIDQG PSGFGGGETN LRGNGISPVK AESLEFGDGY YEMSELEALA MEMQGFGKAR  420
KELEEESEPL EIGDKELDEG FWDELFSERF EGGLSTPSAE IGDDEDVIIL ADRLGYLGST  480
PS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A2e-2416325618122Heat shock factor protein 1
5d5u_B2e-2416325627131Heat shock factor protein 1
5d5v_B2e-2416325627131Heat shock factor protein 1
5d5v_D2e-2416325627131Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1350364KRKELEGAVTKKRRR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00371DAPTransfer from AT3G22830Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP0139851e-31KP013985.1 Populus simonii heat shock transcription factor A6b1 (HsfA6b1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004290633.10.0PREDICTED: heat stress transcription factor A-7a
SwissprotQ9LUH81e-128HFA6B_ARATH; Heat stress transcription factor A-6b
TrEMBLA0A067FZJ31e-180A0A067FZJ3_CITSI; Uncharacterized protein
TrEMBLV4TA971e-180V4TA97_9R
STRINGVIT_00s0179g00150.t011e-166(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110034105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.11e-119heat shock transcription factor A6B