PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna19356.1-v1.0-hybrid
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family LBD
Protein Properties Length: 218aa    MW: 23875.4 Da    PI: 7.8284
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna19356.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260124.36.3e-39191191100
                   DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 
                              +C aCk+lrrkC ++C++apyf ++q +++fa+vhk+FGasn +kll ++p ++r da+ +l+yeA ar+rdPvyG+v++i++lqq
  mrna19356.1-v1.0-hybrid  19 PCGACKFLRRKCLRGCIFAPYFDSDQgTAHFAAVHKVFGASNASKLLLRIPAHKRLDAVVTLCYEALARVRDPVYGCVAHIFTLQQ 104
                              7***********************9989********************************************************** PP

                   DUF260  86 qleqlkaelallkee 100
                              q+ +l+aela+++++
  mrna19356.1-v1.0-hybrid 105 QVVNLQAELAYVQAR 119
                              ***********9976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.79118120IPR004883Lateral organ boundaries, LOB
PfamPF031951.5E-3719117IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MSSGSNNVAN NGEVSQGGPC GACKFLRRKC LRGCIFAPYF DSDQGTAHFA AVHKVFGASN  60
ASKLLLRIPA HKRLDAVVTL CYEALARVRD PVYGCVAHIF TLQQQVVNLQ AELAYVQARL  120
ATLQRLPLPP PPPQPQSHHS LPNVVASSSE LLPISNIMMH LDPIETHQCA AGQEMTSLSS  180
RLDEELIDDG DLQVLAREFV TRYLPGVRFR PPGPHQNF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004306913.11e-161PREDICTED: LOB domain-containing protein 19
SwissprotO813225e-71LBD31_ARATH; LOB domain-containing protein 31
TrEMBLM5X8005e-94M5X800_PRUPE; Uncharacterized protein
STRINGGLYMA03G02631.11e-82(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17713493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00210.12e-69LOB domain-containing protein 31