PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna19355.1-v1.0-hybrid
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family LBD
Protein Properties Length: 244aa    MW: 25145.6 Da    PI: 8.0431
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna19355.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260127.36.9e-40311311100
                   DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 
                              +C aCk+lrrkC+++C++apyf +eq +++fa+vhk+FGasnv+kll+++p ++r+da+ ++++eA+ar++dPvyG+v++i++lqq
  mrna19355.1-v1.0-hybrid  31 PCGACKFLRRKCVAGCIFAPYFDSEQgAAHFAAVHKVFGASNVSKLLHHIPAHKRPDAVLTVCFEAQARLKDPVYGCVAHIFALQQ 116
                              7***********************9989********************************************************** PP

                   DUF260  86 qleqlkaelallkee 100
                              q+ +l+ae+++l+++
  mrna19355.1-v1.0-hybrid 117 QVVNLQAEISYLQAH 131
                              **********99986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.05530132IPR004883Lateral organ boundaries, LOB
PfamPF031958.1E-3931129IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010089Biological Processxylem development
GO:0010199Biological Processorgan boundary specification between lateral organs and the meristem
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MNATTNPSGG CGGGGGSSSG GSAGGGGNAG PCGACKFLRR KCVAGCIFAP YFDSEQGAAH  60
FAAVHKVFGA SNVSKLLHHI PAHKRPDAVL TVCFEAQARL KDPVYGCVAH IFALQQQVVN  120
LQAEISYLQA HLATMELPSP PPPPPPLIAQ PQLSIADLPS APMPATYDLS SLFEPMVQPT  180
AWVMQQRALL HNQHHQFVGG SSSGGVGGGG DLQALARELL HRHTGSPSGS VPCSEASPSR  240
SLSK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004306912.11e-178PREDICTED: LOB domain-containing protein 30
SwissprotO813231e-82LBD30_ARATH; LOB domain-containing protein 30
TrEMBLB9GPH41e-100B9GPH4_POPTR; Uncharacterized protein
STRINGVIT_15s0048g00830.t014e-90(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17713493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45420.11e-78LOB domain-containing protein 18