PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna17613.1-v1.0-hybrid
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family Trihelix
Protein Properties Length: 280aa    MW: 32393.3 Da    PI: 6.101
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna17613.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix621.4e-1926113286
                 trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm......rergferspkqCkekwenlnkrykkikegekkrtsessstcpy 81 
                              Wt++e+ +Li+a++e++ +lrrg+lk+ +Weev+  +        +  +++++qC++k+e+l++r++ +k++ ++      s +py
  mrna17613.1-v1.0-hybrid  26 WTHEETVHLIQAYQEKWYELRRGQLKASQWEEVAVTVaarcgyDYTEQSKTATQCRHKMEKLRQRHRSVKKRLGRS---FGSGWPY 108
                              ***********************************998777776667789************************84...5557*** PP

                 trihelix  82 fdqle 86 
                              fd +e
  mrna17613.1-v1.0-hybrid 109 FDLME 113
                              **998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138374.2E-2025115No hitNo description
PROSITE profilePS500906.2842588IPR017877Myb-like domain
SMARTSM005952.2E-533120IPR006578MADF domain
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MAAPPSPAAS PSASPIFIRK PQPVPWTHEE TVHLIQAYQE KWYELRRGQL KASQWEEVAV  60
TVAARCGYDY TEQSKTATQC RHKMEKLRQR HRSVKKRLGR SFGSGWPYFD LMERLEQGPM  120
PISSRRPYQE SDEEEEVEEE HDVGGGDEVD EEEEDNYRKL QSLDYILRRP AIVNRFSSRA  180
TREGQFRNSA GSKRAREAAG DEGYYGDVVD GQRGTEMVAE LATEIRAFAK RLIGVENMRM  240
EIMRETERCR LEMENRRIDM IRQSQRKIVD SIDRAFALD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna17613.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004292373.10.0PREDICTED: trihelix transcription factor ASIL1
TrEMBLA0A2P6PUD41e-155A0A2P6PUD4_ROSCH; Putative transcription factor MYB family
STRINGXP_004292373.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF100872835
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24860.19e-44Trihelix family protein