PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna16710.1-v1.0-hybrid
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family ERF
Protein Properties Length: 181aa    MW: 19628.6 Da    PI: 6.5032
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna16710.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.71.2e-172170255
                      AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                              ++GVr++  +g+WvAeIr+p+    r +r +lg+f t  eAa a++ a++kl+g
  mrna16710.1-v1.0-hybrid 21 TFRGVRQRT-WGKWVAEIREPK----RgARLWLGTFNTSTEAALAYDDAARKLYG 70
                             69****999.**********83....46************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.16E-302080No hitNo description
SuperFamilySSF541711.05E-202179IPR016177DNA-binding domain
PROSITE profilePS5103221.5092178IPR001471AP2/ERF domain
SMARTSM003803.5E-362184IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.0E-302179IPR001471AP2/ERF domain
PRINTSPR003671.6E-92233IPR001471AP2/ERF domain
PfamPF008472.2E-122270IPR001471AP2/ERF domain
PRINTSPR003671.6E-94460IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MGRSRKGCMK GKGGPENATC TFRGVRQRTW GKWVAEIREP KRGARLWLGT FNTSTEAALA  60
YDDAARKLYG SSAKLNLPDQ SSSSASTSSK TSSGSSSNDK GGGGEHNNIK QEAYNSCDDV  120
HRGWNNDYNN GEISDYCLWE SNPVLSADWS GVCGEREFLE MNDIGVMMGG NEFVSCNMLL  180
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A9e-192283668ATERF1
3gcc_A9e-192283668ATERF1
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00519DAPTransfer from AT5G18450Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna16710.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004302113.11e-131PREDICTED: dehydration-responsive element-binding protein 2D
TrEMBLA0A3S8T9121e-103A0A3S8T912_FRAAN; Transcription factor ERF30
STRINGXP_004302113.11e-131(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25623380
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18450.12e-45ERF family protein