PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna16677.1-v1.0-hybrid
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family G2-like
Protein Properties Length: 605aa    MW: 68779.3 Da    PI: 5.3482
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna16677.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like28.82.7e-09269293125
                  G2-like   1 kprlrWtpeLHerFveaveqLGGse 25 
                              k r+rW +eLHe+Fveav qLGGse
  mrna16677.1-v1.0-hybrid 269 KDRIRWIQELHEAFVEAVIQLGGSE 293
                              68*********************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF542361.8E-699169IPR029071Ubiquitin-related domain
Gene3DG3DSA:3.10.20.904.0E-4100156No hitNo description
Gene3DG3DSA:1.10.10.601.2E-6267294IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 605 aa     Download sequence    Send to blast
MSWNPHGAAV NLSSRHLSIS FADVTGAWRL IFVAEGTEVE TESEGAAVNL SSRHIRPINH  60
PRTSFFDPHT SFFDPQMDIE LIFIQFKDVP AAYSVELGSK DETVNDIKEK LKKEYPNGRH  120
LKPQETLVYK NQELKGGDLI TEYHLPKNTL LHVAERNAVA APTSPKNVKE KEEEGPWDLG  180
VVQSVKQGQL QPVDLLTMDE PFYNNPFLKP KEMNVNRSSG TPAPNLNGSR RKMVVEDETT  240
KLKRSGSYLK LAMDNCSSPD PESSAPSTKD RIRWIQELHE AFVEAVIQLG GSESGNIEQP  300
DTYRSHQKVE LQKRLYEQLE QIAIFAQQLE AVGVDQHAFS IVRSERRQRT AEPETTPTST  360
LSPSFLPPLR ASASSTLGKT FVFYHFFLRL LRVQTNDSFS FVDKHKLLVT VNVIVLLRVI  420
FVVCAADESE EEAKTNITRQ KRKMKSWWSR FLNYPMTKSG RLILVSRMTL KAKYVVLSEM  480
LNQSGFSWNE QEMMLVCEQS VFIEWVEKRN KDVAGLYGKP FWHYYNLGEI YGRDHANGQN  540
LGNADDDDEE EIRRENTNAD PFNLEDETLF DNVNQSVDME PQHEGFEDVD VSFTQPSPQT  600
PSVS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna16677.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G29000.49e-08G2-like family protein