PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna16528.1-v1.0-hybrid
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family Trihelix
Protein Properties Length: 608aa    MW: 69177.3 Da    PI: 6.6009
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna16528.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix48.81.8e-15123181265
                 trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkik 65 
                              W+++e laL+++r+ me+++ +       We+vs+k++e gf+rs+++Ckek+e+ ++++ +i+
  mrna16528.1-v1.0-hybrid 123 WSNDELLALLRIRSTMENWFPEF-----TWEHVSRKLAEAGFKRSAEKCKEKFEEESRYFNNIN 181
                              ********************998.....9*******************************9887 PP

2trihelix93.62e-29470559186
                 trihelix   1 rWtkqevlaLiearremeerlrrgk.....lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpy 81 
                              rW+++evlaLi++r ++ +++ ++       k+plWe++s+ m+e g++r++k+Ckekwen+nk+++k+k+ +kkr s +s+tcpy
  mrna16528.1-v1.0-hybrid 470 RWPRDEVLALINLRCSLFNNVDQQDkdkdvIKAPLWERISQGMSEMGYKRNAKRCKEKWENINKYFRKTKDVNKKR-SLDSRTCPY 554
                              8**************99999987533445599*******************************************8.9999***** PP

                 trihelix  82 fdqle 86 
                              f+ql 
  mrna16528.1-v1.0-hybrid 555 FHQLS 559
                              ***95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.748115174IPR017877Myb-like domain
SMARTSM007178.9119176IPR001005SANT/Myb domain
PfamPF138372.6E-10121183No hitNo description
PROSITE profilePS500906.481463532IPR017877Myb-like domain
SMARTSM007171.9467534IPR001005SANT/Myb domain
PfamPF138374.1E-18469559No hitNo description
CDDcd122031.01E-22469539No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0001158Molecular Functionenhancer sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
Sequence ? help Back to Top
Protein Sequence    Length: 608 aa     Download sequence    Send to blast
MFDGVDPAEQ LHQFIAASRT SLPLPLPNIP LSSFPNLQPF DHPHHHHHHN YNIINPPPPP  60
PPPQELVQLQ PPPHNQLLHP SVVLHRRGND QEKQESSTTL VLPSSNMEIE RQQAAPELPS  120
DPWSNDELLA LLRIRSTMEN WFPEFTWEHV SRKLAEAGFK RSAEKCKEKF EEESRYFNNI  180
NFNKNFRFLS ELEQLYQPPP VEPPQNPAED QPEKNVTQKE LAVEVEKPSE ELGDHQDKSH  240
QPASDAQETS PSNDQTVSEK GMEVVRAKSN NKKRKRQRRF EMLKGFCEDI VNKLMAQQEE  300
IHSKLLEDMV RRDEEKLAKE EAWKKQEMDR MNKELETMAQ EQAVAGDRQA TIIQFLKKYT  360
SSVSTSSSTN PSNGQTETDQ EPITPSTMVP TASKAHKPTT TTSFHTQNIP STPTSLTEAI  420
APQSPSSSNL SNINPKLPAV SSPPPENPSS DHLKTQNPSS NDKPQDLGKR WPRDEVLALI  480
NLRCSLFNNV DQQDKDKDVI KAPLWERISQ GMSEMGYKRN AKRCKEKWEN INKYFRKTKD  540
VNKKRSLDSR TCPYFHQLST LYNQGILVPP SDHQAPPPGK RSPEKQSSSL AEGEKNNVVP  600
AAFDFEF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1272277KRKRQR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00011PBMTransfer from AT5G28300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna16528.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004302032.10.0PREDICTED: trihelix transcription factor GTL2
TrEMBLA0A2H4NFW60.0A0A2H4NFW6_FRAAN; Trihelix transcription factor GT-2C
STRINGXP_004302032.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50433355
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28300.13e-63Trihelix family protein