PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna15193.1-v1.0-hybrid
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family bZIP
Protein Properties Length: 172aa    MW: 19140.2 Da    PI: 7.0909
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna15193.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_147.44.2e-152987563
                             CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                   bZIP_1  5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63
                             ++ +r+q+NRe+ArrsR RK++ ++eL+  v++L +eN +    ++  ++++ ++++e+
  mrna15193.1-v1.0-hybrid 29 RKRKRMQSNRESARRSRMRKQQHLDELTAQVAQLRKENGQILTSINITTQHYMNVEAEN 87
                             6789************************************9999999999888887776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003384.4E-202589IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.9672790IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.6E-112774No hitNo description
SuperFamilySSF579591.75E-122981No hitNo description
PfamPF001701.3E-112983IPR004827Basic-leucine zipper domain
CDDcd147026.09E-213081No hitNo description
PROSITE patternPS0003603247IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MATSSGNSSG SQLHNSGSEG DLQHAIDQRK RKRMQSNRES ARRSRMRKQQ HLDELTAQVA  60
QLRKENGQIL TSINITTQHY MNVEAENSVL KAQMAELSQR LDSLTEILNY INGNNNINSN  120
NNGVFETEPA GQLLQTGSTA ADHNSSFMMN PWNNLLYSNL PIMATADMLQ Y*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14148RRSRMRKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004291844.11e-123PREDICTED: ocs element-binding factor 1-like
TrEMBLM5XZQ22e-74M5XZQ2_PRUPE; Uncharacterized protein
STRINGPOPTR_0005s25290.13e-61(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF61334147
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75390.15e-46basic leucine-zipper 44