PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna13324.1-v1.0-hybrid
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family LBD
Protein Properties Length: 146aa    MW: 16298.5 Da    PI: 6.6549
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna13324.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260126.51.2e-3951071100
                   DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee...redamsslvyeAearardPvyGavgvilkl 83 
                              +CaaCk+lr++C++dC++apyfp+++p++f+nvh+++Ga+nv  +lk+l++ +   r +a+++l+yeAe r+++PvyG++++i++l
  mrna13324.1-v1.0-hybrid   5 RCAACKYLRKACPEDCIFAPYFPSNNPQRFENVHRIYGAKNVATMLKELEPLQpylRAQAVETLCYEAESRIQNPVYGCAAIIFHL 90 
                              6************************************************66554559***************************** PP

                   DUF260  84 qqqleqlkaelallkee 100
                              qqq+++ ++ela+l++e
  mrna13324.1-v1.0-hybrid  91 QQQIHNIESELAKLRAE 107
                              ************99987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089124.4434108IPR004883Lateral organ boundaries, LOB
PfamPF031951.3E-385105IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 146 aa     Download sequence    Send to blast
MVMGRCAACK YLRKACPEDC IFAPYFPSNN PQRFENVHRI YGAKNVATML KELEPLQPYL  60
RAQAVETLCY EAESRIQNPV YGCAAIIFHL QQQIHNIESE LAKLRAEIAI LSSNGHGQAS  120
EIQLSTDQVH EDQSGSSSKA PNWFI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-33610812111LOB family transfactor Ramosa2.1
5ly0_B2e-33610812111LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna13324.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004309226.11e-106PREDICTED: LOB domain-containing protein 24-like
SwissprotP594687e-42LBD24_ARATH; LOB domain-containing protein 24
TrEMBLA0A2P6SMZ92e-77A0A2P6SMZ9_ROSCH; Putative transcription factor AS2-LOB family
STRINGXP_004309226.11e-105(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF36973066
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26660.13e-44LOB domain-containing protein 24