PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna10779.1-v1.0-hybrid
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family Trihelix
Protein Properties Length: 392aa    MW: 44432 Da    PI: 10.0887
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna10779.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix57.53.6e-1878168186
                 trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrtsessstcpy 81 
                              +Wt++e + Li a+r+++ +lrr++lk+++W++v+k+      ++    +++ qC++k+e+l+kry+++k+++++   +  s++++
  mrna10779.1-v1.0-hybrid  78 CWTQDEAQSLILAYRDRWFALRRANLKAADWDHVAKATaaassSSSSPPKTALQCRHKMEKLRKRYRAEKQRASNYPGRFFSSWAL 163
                              8*************************************888877777799*************************9999999**** PP

                 trihelix  82 fdqle 86 
                              f+ ++
  mrna10779.1-v1.0-hybrid 164 FHLMD 168
                              **998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.7E-1877170No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MVGLTQARTR SGPIVPGGTP FPSPHRATRP RQHYLTAFIH HQPQCPPLYL SSSTKPTTSP  60
TIMSTTVVTK PRRVPPPCWT QDEAQSLILA YRDRWFALRR ANLKAADWDH VAKATAAASS  120
SSSSPPKTAL QCRHKMEKLR KRYRAEKQRA SNYPGRFFSS WALFHLMDEM ESDPDRKPID  180
EGEFGGKGRN LVNVDRSFSP NGDFDGIGGS VFDLGNELYQ NSRFNYRFGE NSGFYSEDNE  240
YVNRGGFPSR TRSNGKSDVN LNNSFNQHRD YGIRSDRDYV PSGSLKRNAH CKEFDGYASL  300
SGSKFGKKRS VVGMERDVDP VADLASSIMM LGEGFERMER MKMEMTWEIE KRRMETELKR  360
TEAMNESLQQ FVDALLERKK KKKAMVESSH A*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1376382ERKKKKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna10779.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004301730.20.0PREDICTED: trihelix transcription factor ASIL2-like
TrEMBLA0A2P6P8Z01e-123A0A2P6P8Z0_ROSCH; Putative transcription factor Trihelix family
STRINGXP_004301730.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF137971421
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44730.11e-36Trihelix family protein