PlantTFDB
Plant Transcription Factor Database
v5.0
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna10300.1-v1.0-hybrid
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family LBD
Protein Properties Length: 302aa    MW: 32338.4 Da    PI: 8.6348
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna10300.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26099.33.8e-3141081100
                   DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvil 81 
                              +C++C++lr++C+++C ++p++     p++q++++ +++k++G++ +++l++a pe+ r+++++sl+yeA+ r+ +P+yG+vg+++
  mrna10300.1-v1.0-hybrid   4 SCNGCRILRKGCSENCSIRPCLqwiksPESQANATVFLAKFYGRAGLMNLINAGPENLRPAIFRSLLYEACGRIVNPIYGSVGLLW 89 
                              6************************************************************************************* PP

                   DUF260  82 klqqqleqlkaelallkee 100
                              ++++ql+q+++e +l +++
  mrna10300.1-v1.0-hybrid  90 SGSWQLCQAAVENVLKGQP 108
                              ***********99988776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381553.7E-941299IPR017414LOB domain-containing protein 10/36/41
PROSITE profilePS5089117.0123109IPR004883Lateral organ boundaries, LOB
PfamPF031957.4E-254102IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MRMSCNGCRI LRKGCSENCS IRPCLQWIKS PESQANATVF LAKFYGRAGL MNLINAGPEN  60
LRPAIFRSLL YEACGRIVNP IYGSVGLLWS GSWQLCQAAV ENVLKGQPIT PITSEAAANG  120
HGPPLKAYDI RHVSKDENSA ASTDPQKAKT RYRFKRSAVK PKPNKTGSGS GVEDAAAARF  180
EAKPYWVGDE FNRSTSHDSS LSHQSEAANV DGDSKETESM VSSETAEASL LFRAEPESSP  240
RKRTAPVQES ELALELTLGL ESSSSRAPHV VPVKKRRVEA SGFCGGSSSG DGACKMELGL  300
A*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna10300.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004304129.10.0PREDICTED: LOB domain-containing protein 41-like
SwissprotQ9M8861e-106LBD41_ARATH; LOB domain-containing protein 41
TrEMBLA0A2P6S3540.0A0A2P6S354_ROSCH; Putative transcription factor AS2-LOB family
STRINGXP_004304129.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15463499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.12e-93LOB domain-containing protein 41