PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna09798.1-v1.0-hybrid
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family C2H2
Protein Properties Length: 324aa    MW: 35403.5 Da    PI: 6.9445
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna09798.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.80.0016143165123
                              EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                              y+C+ C+++Fs+   L  H  +H
  mrna09798.1-v1.0-hybrid 143 YECKTCNRCFSSFQALGGHRASH 165
                              99**********99999998887 PP

2zf-C2H211.10.0012226248123
                              EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                              ++C+ Cg  F +   L  H+r+H
  mrna09798.1-v1.0-hybrid 226 HECSVCGAEFASGQALGGHMRRH 248
                              78********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.63E-9142165No hitNo description
PfamPF139121.4E-10142167IPR007087Zinc finger, C2H2
SMARTSM003550.21143165IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.45143170IPR007087Zinc finger, C2H2
PROSITE patternPS000280145165IPR007087Zinc finger, C2H2
SuperFamilySSF576672.63E-9221248No hitNo description
Gene3DG3DSA:3.30.160.604.3E-4221248IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139121.3E-12225249IPR007087Zinc finger, C2H2
SMARTSM003550.019226248IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.598226248IPR007087Zinc finger, C2H2
PROSITE patternPS000280228248IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MEAANLEEDQ SQMMIIKGKR TKRPRQSSPI VLTTTASSSS SPGGGGDDVE DHHHHHQSGM  60
MSTPIRVSDQ DDETTASPAT SAELTEMSTT EEEEDMANCL ILLAQSGQTQ IQKVQEQQLL  120
LLQQQQPIKA VAAADTAPGL YVYECKTCNR CFSSFQALGG HRASHKKPKV ISNVTNTTQA  180
QPKKALSFME DQDEYDRRFN NNTTSTTLSL QVSNRVFGNS KGTKVHECSV CGAEFASGQA  240
LGGHMRRHRT FINTTTTAPA APTMSSPQSH QASNKRPRSV LELDLNLPAP EEERLDITKL  300
PFSSSKKEQV IVFSASPLVR CHY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna09798.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004306266.20.0PREDICTED: zinc finger protein ZAT5-like
TrEMBLA0A2P6RB510.0A0A2P6RB51_ROSCH; Putative transcription factor C2H2 family
STRINGXP_004306266.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58634141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28200.13e-44C2H2 family protein