PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna09780.1-v1.0-hybrid
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family G2-like
Protein Properties Length: 306aa    MW: 33146.8 Da    PI: 6.7693
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna09780.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like1092.5e-344296155
                  G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                             kprlrWt eLHerFv+av+qLGG++kAtPkti+++m+vkgLtl+h+kSHLQkYRl
  mrna09780.1-v1.0-hybrid 42 KPRLRWTAELHERFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRL 96
                             79****************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.1E-333997IPR009057Homeodomain-like
PROSITE profilePS5129413.0953999IPR017930Myb domain
SuperFamilySSF466891.77E-174199IPR009057Homeodomain-like
TIGRFAMsTIGR015572.0E-244297IPR006447Myb domain, plants
PfamPF002499.3E-94495IPR001005SANT/Myb domain
PfamPF143794.4E-27138185IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010628Biological Processpositive regulation of gene expression
GO:0016036Biological Processcellular response to phosphate starvation
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MYSAMHSLPL DGGVCGHGEF SGSLDGTNLP GDACLVLTTD PKPRLRWTAE LHERFVDAVT  60
QLGGPDKATP KTIMRTMGVK GLTLYHLKSH LQKYRLGKQS FKESTENSKD ASCIAECQDT  120
GSSATSSRVI AQDLNDGFQV TEALRVQMEV QRRLHEQLEV QRRLQLRIEA QGKYLQSILE  180
KACKALNDQA ATAAGLEAAK EELSELAIKV SSDCQGMTPL DTIKMPSLSE IAAAIENKSV  240
PNILARMGNC SVDSCLTSTG SPGSPMGMSS LAVKKRQRPF FGNGESLPLD GNMRQEVEWM  300
MNNIG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A6e-204298157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B6e-204298157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C6e-204298157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D6e-204298157Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator (PubMed:26586833). Acts redundantly with PHR1 as a key component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). {ECO:0000269|PubMed:26586833}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00378DAPTransfer from AT3G24120Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna09780.1-v1.0-hybrid
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in roots by low Pi. {ECO:0000269|PubMed:26586833}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFR8285390.0FR828539.1 Rosa rugosa mRNA for putative MYB transcription factor (myb6 gene).
GenBankFR8285450.0FR828545.1 Rosa rugosa mRNA for putative MYB transcription factor (myb12 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011464129.10.0PREDICTED: myb family transcription factor APL isoform X2
SwissprotQ94A571e-141PHL2_ARATH; Protein PHR1-LIKE 2
TrEMBLA0A2P6QWK30.0A0A2P6QWK3_ROSCH; Putative sterol 14-alpha-demethylase transcription factor MYB-HB-like family
STRINGXP_004299108.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF133672126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24120.11e-126G2-like family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]