PlantTFDB
Plant Transcription Factor Database
v5.0
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna09561.1-v1.0-hybrid
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family LBD
Protein Properties Length: 410aa    MW: 46780.7 Da    PI: 6.0349
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna09561.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260116.41.7e-36801801101
                   DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 
                              aCaaCk++rrkC+++C+lapyfpa+qpk f+n+hklFG+ n+lk+lk++++  + ++m+s++ +A++r + PvyG+ +vi++lq q
  mrna09561.1-v1.0-hybrid  80 ACAACKYQRRKCTPECPLAPYFPADQPKMFQNAHKLFGVCNILKILKTVDPCFKFETMKSIICQANIREKFPVYGCWEVIWQLQYQ 165
                              7************************************************************************************* PP

                   DUF260  87 leqlkaelallkeel 101
                              ++ +++el+ ++++l
  mrna09561.1-v1.0-hybrid 166 IMAAEQELQNVHKQL 180
                              **********99985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.00879180IPR004883Lateral organ boundaries, LOB
PfamPF031952.7E-3580177IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009556Biological Processmicrosporogenesis
GO:0009786Biological Processregulation of asymmetric cell division
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 410 aa     Download sequence    Send to blast
MLLLIPTFFF TLTIFLTSFF FLILLLHHYR HLCIHLSNSF PLSFNRLHLP HWSEPPPQPS  60
RRDLLGNQDI MTLKGATSQA CAACKYQRRK CTPECPLAPY FPADQPKMFQ NAHKLFGVCN  120
ILKILKTVDP CFKFETMKSI ICQANIREKF PVYGCWEVIW QLQYQIMAAE QELQNVHKQL  180
ALYRQHHYHQ QQQISAMPDY VTSQLELGMA PPNNNNTISF LNHSTPQSYD NNNNAIHHAL  240
PVTQQQQQHY SNRSDDAYTS AYDIDSKQTI TTDNVLWAQN PFTNNSINEN NDNAETVQSQ  300
FGVSQTLAMG SEDVQDYDEL HPFFDTIDDR QSYIDSKEAY DSSSSEESLK DTTQISMDHA  360
ADDNTLKSAA ACFSLTSVKL SVQNSEPLLQ FPSSKVYKCL VLIEAKGLD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A6e-248118312114LOB family transfactor Ramosa2.1
5ly0_B6e-248118312114LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna09561.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011464557.10.0PREDICTED: LOB domain-containing protein 27-like
SwissprotQ9STS66e-54LBD27_ARATH; LOB domain-containing protein 27
TrEMBLA0A2P6P2D10.0A0A2P6P2D1_ROSCH; Putative transcription factor AS2-LOB family
STRINGXP_004301305.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF44152958
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47870.11e-54LOB domain-containing protein 27
Publications ? help Back to Top
  1. Kim MJ,Kim M,Kim J
    Combinatorial interactions between LBD10 and LBD27 are essential for male gametophyte development in Arabidopsis.
    Plant Signal Behav, 2015. 10(8): p. e1044193
    [PMID:26252070]
  2. Kim M,Kim MJ,Pandey S,Kim J
    Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development.
    Plant Cell Physiol., 2016. 57(11): p. 2291-2299
    [PMID:27519310]