PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna08074.1-v1.0-hybrid
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family ERF
Protein Properties Length: 150aa    MW: 16941.6 Da    PI: 7.5061
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna08074.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.12.6e-191870156
                      AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                             ++y+G r+++ +gr++AeIrdp+ ng  +r +lg+f+tae+Aa+a+++a+ +l+g+
  mrna08074.1-v1.0-hybrid 18 TRYRGTRRRP-WGRYAAEIRDPTRNG--ARLWLGTFDTAEQAARAYDRAAFRLRGN 70
                             58********.**********98887..**************************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.98E-281878No hitNo description
PfamPF008472.9E-131869IPR001471AP2/ERF domain
SMARTSM003801.1E-321983IPR001471AP2/ERF domain
SuperFamilySSF541712.29E-231978IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.3E-301979IPR001471AP2/ERF domain
PROSITE profilePS5103224.8291977IPR001471AP2/ERF domain
PRINTSPR003671.3E-102031IPR001471AP2/ERF domain
PRINTSPR003671.3E-104359IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 150 aa     Download sequence    Send to blast
MEGKREDNQN QARVRDPTRY RGTRRRPWGR YAAEIRDPTR NGARLWLGTF DTAEQAARAY  60
DRAAFRLRGN LAILNFPNEY HYHMHNSSTS SSVTSNCSSS SSAAISSAAA DDTGNKPFCK  120
QESEVIVFEY LDNMILEELL ATKEDTREN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A8e-2919801475Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna08074.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004292208.11e-108PREDICTED: ethylene-responsive transcription factor ERF098-like
SwissprotQ9LTC51e-41ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A3S8T9942e-91A0A3S8T994_FRAAN; Transcription factor ERF79
STRINGXP_004292208.11e-108(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27033215
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.15e-19ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]