PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna08071.1-v1.0-hybrid
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family ERF
Protein Properties Length: 147aa    MW: 16087 Da    PI: 8.4822
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna08071.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.73.4e-192070255
                      AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                             +y+GVr+++ +g+++AeIrd +++g   r +lg+f ta eAa+a+++a+ +++g
  mrna08071.1-v1.0-hybrid 20 KYRGVRRRP-WGKFAAEIRDSTKQG--VRLWLGTFNTATEAARAYDKAAFSMRG 70
                             8********.**********55444..*************************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541716.41E-222078IPR016177DNA-binding domain
PROSITE profilePS5103222.552078IPR001471AP2/ERF domain
CDDcd000182.80E-282078No hitNo description
Gene3DG3DSA:3.30.730.103.4E-302079IPR001471AP2/ERF domain
SMARTSM003809.2E-342086IPR001471AP2/ERF domain
PfamPF008471.2E-132070IPR001471AP2/ERF domain
PRINTSPR003671.6E-102132IPR001471AP2/ERF domain
PRINTSPR003671.6E-104460IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 147 aa     Download sequence    Send to blast
MKEDTSKSNK VEEEGQKYVK YRGVRRRPWG KFAAEIRDST KQGVRLWLGT FNTATEAARA  60
YDKAAFSMRG PLAILNFRSE HGFVDADSAA ATSSCFTASS STLHNTVMRT EPGKEVIVFE  120
VHLPGLHTDE DATAAQLDAI TKPSFA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-291581975Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna08071.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004292207.16e-85PREDICTED: ethylene-responsive transcription factor ERF098-like
TrEMBLA0A3Q8TD921e-77A0A3Q8TD92_FRAAN; Transcription factor ERF81
STRINGXP_004292207.12e-84(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27033215
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43410.18e-31ERF family protein