PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna08029.1-v1.0-hybrid
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family Trihelix
Protein Properties Length: 452aa    MW: 51999 Da    PI: 6.7414
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna08029.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix85.75.7e-27124220185
                 trihelix   1 rWtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tse 74 
                              +Wt+++v++Li+a+++++e++++++           +kk++W++vsk+m+erg+++sp+qC++k+++lnkrykk++++ +++ +++
  mrna08029.1-v1.0-hybrid 124 KWTDKMVRLLITAVSYIGEDIGSDCgggvrrkfsalQKKGKWKSVSKVMAERGYHVSPQQCEDKFNDLNKRYKKLNDMLGRGtSCQ 209
                              7**********************9888999999999**********************************************5699 PP

                 trihelix  75 ssstcpyfdql 85 
                              ++++ +++d +
  mrna08029.1-v1.0-hybrid 210 VVENPALLDVI 220
                              99888887765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138374.8E-24122247No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 452 aa     Download sequence    Send to blast
MDGHLSQGGR IPGGGSYVGL DLQGSMRAHH QTQHPHNLQQ QQQQQHQISR QGSMVHPSIH  60
EGFPVKMGTM HNCDRTLSMV DYNKGEKCKN SMSDEDEPSY TEEGVDSHIE ASRGKKGSPW  120
QRVKWTDKMV RLLITAVSYI GEDIGSDCGG GVRRKFSALQ KKGKWKSVSK VMAERGYHVS  180
PQQCEDKFND LNKRYKKLND MLGRGTSCQV VENPALLDVI DYLTEKEKDD VRKILSSKHL  240
FYEEMCSYHN GNRLHLPHDP ALQHALQEAL RNRDDHDTDD LRRHHHDDLD EDDQDMETDE  300
RDDFEENNVS HGENRGMFGG SGDSVKRLRQ CQGREDINFG GFLNAQDCNK SSYSHPQIAQ  360
GDINQALPDS TKAAWLQKQW IESRSVQLEE QRLQIQVEML ELEKQRLKWQ KFSKKRDREL  420
EKLKMENERM KLENERMALE LKRKEMGAGF S*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1714GGRIPGGG
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna08029.1-v1.0-hybrid
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011458509.10.0PREDICTED: uncharacterized protein LOC101296534
TrEMBLA0A2P6PS330.0A0A2P6PS33_ROSCH; Putative transcription factor Trihelix family
STRINGXP_004290521.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50013157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21200.11e-170sequence-specific DNA binding transcription factors