PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna06358.1-v1.0-hybrid
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family Trihelix
Protein Properties Length: 298aa    MW: 33402.7 Da    PI: 9.7249
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna06358.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix66.65.1e-21205285186
                 trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                              +W+ +ev++ i++r ++++r++  k +++lWee+s+++ ++g++rsp qCk+ w +l ++y++ k g++++     +++py+++++
  mrna06358.1-v1.0-hybrid 205 KWKPEEVKKFIKMRGKLHSRFQVVKGRMALWEEISRNLLAEGINRSPGQCKSLWASLVQKYEESKSGKRSQ-----KSWPYYEEMD 285
                              7******************************************************************9984.....56*******7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500908.06198262IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.4E-5202263IPR009057Homeodomain-like
PfamPF138379.0E-19203285No hitNo description
CDDcd122032.17E-21204269No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MSRPSHLRSS LALLQSPPSL IPGAVEIFSH RGKEEPTQAS PSQGLSLTRP VEPRIHLHGQ  60
RPSPAAWRSR TGVICLCEFA LSPRVRENPA AVLADEVSTR LSGKSHVGYD RSALRKVNDG  120
NLNKSRSTRT QSDEAKDNIE LQSSTIEKDF EEEPNDIWNA MVKLSAGDKL AEDKNDLVLQ  180
EENLKKDDPE STERTSPSKP VKRNKWKPEE VKKFIKMRGK LHSRFQVVKG RMALWEEISR  240
NLLAEGINRS PGQCKSLWAS LVQKYEESKS GKRSQKSWPY YEEMDGALSD SEAMATK*
Functional Description ? help Back to Top
Source Description
UniProtEssential protein required during embryogenesis, especially in initiating and maintaining the organization of shoot apical meristems (SAMs), cotyledons, and hypocotyls (PubMed:15266054, PubMed:25871650). Involved in auxin-mediated pathways during embryogenesis (PubMed:25871650). RNase that has both endonuclease and 5'-3' exonuclease activities. Involved in RNA surveillance to prevent overaccumulation of antisense RNA (PubMed:22033332). Probably involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay (By similarity). {ECO:0000250|UniProtKB:Q72JJ7, ECO:0000269|PubMed:15266054, ECO:0000269|PubMed:22033332, ECO:0000269|PubMed:25871650}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna06358.1-v1.0-hybrid
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. {ECO:0000269|PubMed:25871650}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011463282.11e-152PREDICTED: uncharacterized protein LOC105351207
SwissprotQ84W565e-55RNJ_ARATH; Ribonuclease J
TrEMBLA0A2P6P4Z11e-113A0A2P6P4Z1_ROSCH; Putative beta-lactamase transcription factor MYB family
STRINGXP_004297533.11e-132(Fragaria vesca)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63420.14e-57Trihelix family protein
Publications ? help Back to Top
  1. Bryant N,Lloyd J,Sweeney C,Myouga F,Meinke D
    Identification of nuclear genes encoding chloroplast-localized proteins required for embryo development in Arabidopsis.
    Plant Physiol., 2011. 155(4): p. 1678-89
    [PMID:21139083]
  2. Halpert M,Liveanu V,Glaser F,Schuster G
    The Arabidopsis chloroplast RNase J displays both exo- and robust endonucleolytic activities.
    Plant Mol. Biol., 2019. 99(1-2): p. 17-29
    [PMID:30511330]