PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna05925.1-v1.0-hybrid
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family NF-YC
Protein Properties Length: 261aa    MW: 28909.6 Da    PI: 6.2276
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna05925.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC177.41.4e-55801831101
                    NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaav 83 
                              ql++fw+ q   ie+a+dfknh+lPlarikki+kadedv+misaeaPv++++ace+fileltlrsw+h+eenkrrtl+k+diaaa+
  mrna05925.1-v1.0-hybrid  80 QLQNFWSGQyqeIEQANDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAI 165
                              89****988888************************************************************************** PP

                    NF-YC  84 trtdifdflvdivprdel 101
                              trtdifdflvdivpr++l
  mrna05925.1-v1.0-hybrid 166 TRTDIFDFLVDIVPREDL 183
                              ***************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471136.37E-3454174IPR009072Histone-fold
PfamPF008081.6E-21102165IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.101.0E-37103180IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009005anatomyroot
PO:0007134developmental stagesporophyte vegetative stage
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MDQQGHGHPA TMGVPGSAGQ ASYGVNPYQP SQMMGLSPTG SVGMMHSPTQ PGGPSTPSQL  60
AQHQAYQHIH QQQQQQLQQQ LQNFWSGQYQ EIEQANDFKN HSLPLARIKK IMKADEDVRM  120
ISAEAPVIFA RACEMFILEL TLRSWNHTEE NKRRTLQKND IAAAITRTDI FDFLVDIVPR  180
EDLKDEVLAS IPRGGNVPVV GPADGLPYYY MPAQPPSQVG PPGMMVGKPV MDQNMYGQPT  240
HPYMSQPAWP QQQQPPKDSE *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g92_C1e-41661804119HapE
4g91_C1e-41661804119HapE
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1152158RRTLQKN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004296931.10.0PREDICTED: nuclear transcription factor Y subunit C-9-like
RefseqXP_004296934.10.0PREDICTED: nuclear transcription factor Y subunit C-9-like
RefseqXP_004296935.10.0PREDICTED: nuclear transcription factor Y subunit C-9-like
SwissprotQ8L4B25e-85NFYC9_ARATH; Nuclear transcription factor Y subunit C-9
TrEMBLM5XZG01e-145M5XZG0_PRUPE; Uncharacterized protein
STRINGPOPTR_0010s03730.11e-120(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF125734108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08970.44e-78nuclear factor Y, subunit C9