PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna03778.1-v1.0-hybrid
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family bZIP
Protein Properties Length: 1107aa    MW: 122711 Da    PI: 7.7588
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna03778.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_130.11.1e-09822863445
                              XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                   bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 
                               k+ rr+++NReAAr+sR+RKka++++Le+   +L++  ++L
  mrna03778.1-v1.0-hybrid 822 QKALRRLAQNREAARKSRLRKKAYVQQLENSRLKLSQLEQEL 863
                              5889*************************9877777766655 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045154.4E-53159453IPR007603Choline transporter-like
SMARTSM003382.9E-7819882IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1702.1E-6820866No hitNo description
PROSITE profilePS502179.381821865IPR004827Basic-leucine zipper domain
PfamPF077162.5E-5821865IPR004827Basic-leucine zipper domain
SuperFamilySSF579595.25E-6823866No hitNo description
CDDcd147082.82E-25823874No hitNo description
PROSITE patternPS000360826841IPR004827Basic-leucine zipper domain
PfamPF141445.4E-30906979IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1107 aa     Download sequence    Send to blast
MNNVSHSSSS SSSVNSASIS ASDPNVGRSR SGDGSQTMAA EPSRRWRDVF WLGIFMIHLI  60
LVGGALAVLG LNRFKKSDRL NLDQYTKNYL ENQKGFTEDY WPLYALAGGV GTVLGWTWLL  120
FLGSQASHMM KIAVHILTTY LAVLSVLCFW MEQFFWGVAF AIGAGLLFLY VLAVIDRLPF  180
TMLVLQAAVK MVWSLPEVMR VAYAFMLIML LWMGIWSFGA AGVVALGIGD GGRWWLLVVL  240
SVSLFWTGAV LCNTVHVIVS GMVFLVLSHG GREASSIPSK SLMKSLRYAV TTSFGSICYG  300
SLFTAAIRSL RWKIRGVRSK IGNNECLLCC VDFLFHLVET LVRFFNKYAY VQIAVSGKSF  360
NHSARDAWEL FQSTGVEALI AYDCSGAVLL MGTLLGGLIT GTCSGVWTWV KYRDRVAMVG  420
STAMLMGMIL VGIAMVVVES AVTSIYICYA EDPLLIHRWD PEFFNQMSEM LHQRLQHRSA  480
RAREVLTHNR AALQLRSELS KEVGQSGSKQ TSEAQSSCRY RSYTQTKLEM ENRKRLCDDG  540
DDGQGDHGKS HVRPFLCLHH HQDLSFSVSL TQTPNKARAV NAMLPMESAT RRSRGAEAEP  600
TVNKPLSVGA VKLLCHYQES HCWYLSFPFS IWVPLVIFSS VKWATAESER DAPGGENGGG  660
GIEFWRGGDD TQTRFADLGE LDHSATVFPH DDALDLSPSS IFSLKANNNN VAVVPNAFHY  720
ATLNTSPGCL DIGSTLSGEQ QYMYQHHKGT TSSGNNGHFE NWGDSAMAEH SQQTDTSTDI  780
DTEDKNHVNS FALVPLRGAQ HGALVVVDSN SIEQANGRTG DQKALRRLAQ NREAARKSRL  840
RKKAYVQQLE NSRLKLSQLE QELQRARQQG VFVGLSGDQG HSVAGTGALT FDFEYARWLD  900
EHQHLIHELR SAVNSHLVDN GLRIHVDSVM THYDEIFRLK SVAVKADVFH MLSGMWKTPA  960
ERCFMWLGGF RSSELLKILG NQLEPLTDQQ LMGICNLQQS SQQTEDALSQ GMEALQQSLV  1020
DTLSSTSNGS TGSDVADYMG QMAIAMGKLA TLQNFIIQAD LLRQQTLQQL YRILTTRQAA  1080
RALLVINDYF SRLRALSSLW MARPRD*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ0088120.0JQ008812.1 Rosa chinensis cultivar Old Blush perianthia mRNA, complete cds.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF539622
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68640.11e-127bZIP family protein