PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna03741.1-v1.0-hybrid
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family LBD
Protein Properties Length: 232aa    MW: 24915.3 Da    PI: 8.139
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna03741.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26089.15.8e-284105197
                   DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvil 81 
                              +C++C+vlr++C+++C ++p++     p++q++++ +++k++G++ +l+l++a  +++r+ +++sl+yeA+ r+ +P  G+vg+++
  mrna03741.1-v1.0-hybrid   4 SCNGCRVLRKGCSENCEIRPCIewiksPESQANATLFLAKFYGRAGLLNLINAGAQHQRPGIFKSLLYEACGRIVNPTFGSVGLLS 89 
                              6************************************************************************************* PP

                   DUF260  82 klqqqleqlkaelall 97 
                              ++++  +q++++++l+
  mrna03741.1-v1.0-hybrid  90 SGNWAQCQAAVDAVLA 105
                              **********998876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089115.853109IPR004883Lateral organ boundaries, LOB
PfamPF031959.5E-224102IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MRTSCNGCRV LRKGCSENCE IRPCIEWIKS PESQANATLF LAKFYGRAGL LNLINAGAQH  60
QRPGIFKSLL YEACGRIVNP TFGSVGLLSS GNWAQCQAAV DAVLAGLPIV ENNEPVPYLN  120
PFPPVNSCDI RHVSKDTSLG KTRNRFKRSR SKVQLGSITE AAAEWGRVNP LEFGQCSSGG  180
GGERSMQSVE TVEAPWEMNQ GKPDPVGNGD EEEVGLELTL GFGFGKLKGK A*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna03741.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004299077.11e-170PREDICTED: LOB domain-containing protein 42
SwissprotQ9CA301e-71LBD42_ARATH; LOB domain-containing protein 42
TrEMBLA0A2P6R1Q01e-138A0A2P6R1Q0_ROSCH; Putative transcription factor AS2-LOB family
STRINGXP_004299077.11e-169(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15463499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68510.12e-70LOB domain-containing protein 42