PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna02091.1-v1.0-hybrid
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family Trihelix
Protein Properties Length: 365aa    MW: 42273.5 Da    PI: 4.6093
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna02091.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix43.77e-14126210186
                 trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrer.gferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 
                              +Wt++ v +L+e+  ++  +l+r++l+  +W +v++k++e+ ++ers kqC+  ++ l+++ykk+k+ ++++  + ss++ y++++
  mrna02091.1-v1.0-hybrid 126 EWTEHAVFVLLEVWGDRFLQLGRKSLRSEDWGDVAAKVSEGcKMERSEKQCRRMLDMLKRKYKKEKAKMEEG--GGSSNWGYYKKM 209
                              5*************************************876378**************************97..7888******** PP

                 trihelix  86 e 86 
                              e
  mrna02091.1-v1.0-hybrid 210 E 210
                              8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138373.7E-18125211No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MDDMEDDQRY HPKPYSLNHH SSSNRRNPHI RNTPYSRPPP PNRYSPEDDD DAIEDDLDEE  60
SYGKQDDVVV VAEQYHQHHP NRGFDAENGW EWHPKKRKLK NLDPGSGYEF APRVKMPGRV  120
GSGQEEWTEH AVFVLLEVWG DRFLQLGRKS LRSEDWGDVA AKVSEGCKME RSEKQCRRML  180
DMLKRKYKKE KAKMEEGGGS SNWGYYKKME MLMVNSMRQE CGLACGVDNG EYVFMNTRVY  240
LEKSNGFDEM MDSPGESEDD DENENENVSG QNGFGFALPR QGGSSYRVLA ESIQKFGEIY  300
ENLESRKRQQ MMELEKMRRE FNKEMEVQKK QILERAQAEI AKIQEAGDDD DDEDSDTSAE  360
DLTE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna02091.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004288693.10.0PREDICTED: trihelix transcription factor ASIL1
RefseqXP_011458483.10.0PREDICTED: trihelix transcription factor ASIL1
RefseqXP_011458517.10.0PREDICTED: trihelix transcription factor ASIL1
TrEMBLA0A2P6RJK91e-172A0A2P6RJK9_ROSCH; Putative transcription factor Trihelix family
STRINGXP_004288693.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24413480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24490.11e-64Trihelix family protein