PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00005055.1.g00002.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family ERF
Protein Properties Length: 248aa    MW: 27756.2 Da    PI: 6.399
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00005055.1.g00002.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.91.4e-1983131254
                             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54 
                                      y+GVr+++ +g+WvAeIr p++   r+r +lg+f taeeAa a+++a+ kl+
  FANhyb_rscf00005055.1.g00002.1  83 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFETAEEAALAYDKAAYKLR 131
                                     59******9.**********965...5***********************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.70E-2882131No hitNo description
Gene3DG3DSA:3.30.730.105.2E-2783132IPR001471AP2/ERF domain
SuperFamilySSF541712.16E-1883131IPR016177DNA-binding domain
PROSITE profilePS5103220.78483148IPR001471AP2/ERF domain
SMARTSM003802.4E-2683145IPR001471AP2/ERF domain
PfamPF008473.2E-1384131IPR001471AP2/ERF domain
PRINTSPR003672.5E-118495IPR001471AP2/ERF domain
PRINTSPR003672.5E-11106122IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MFPQVGFEQT GSLGLNQLTP SHIHQIQTQM ILQQQHQQQQ KQQIAALAPL PNQYHHQNTH  60
TLNFLAPKAV PMKQSGTPKP TKLYRGVRQR HWGKWVAEIR LPKNRTRLWL GTFETAEEAA  120
LAYDKAAYKL RVDAKLEAIC ESLAANAPKQ TKTEELCSVT ETKPVISAPK MVLDDALSTE  180
LKTEWDSPKL EAFSSSSSPS RSCDESSAGS SSPESDITFL DFSDSQWAEN DTFGLEKYPS  240
VEIDWSAI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-1882131151ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A2e-1882131454ATERF1
3gcc_A2e-1882131454ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004288218.11e-142PREDICTED: ethylene-responsive transcription factor RAP2-4-like
SwissprotO656658e-62ERF60_ARATH; Ethylene-responsive transcription factor ERF060
TrEMBLA0A3S8T9141e-142A0A3S8T914_FRAAN; Transcription factor ERF4
STRINGXP_004288218.11e-141(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF105732109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22200.11e-40ERF family protein