PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00004706.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family WOX
Protein Properties Length: 117aa    MW: 13432.1 Da    PI: 8.9842
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00004706.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.21.9e-202282257
                                    T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                        Homeobox  2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                                     +R+++tkeq+++Le+l+ek  r+psae ++  +++l    +++ ++V++WFqN++a++++
  FANhyb_rscf00004706.1.g00001.1 22 TTRWNPTKEQITILEDLYEKgMRTPSAEFIQAVTARLntygHIEGKNVFYWFQNHKARQRQ 82
                                    58*****************99**************************************97 PP
2Wus_type_Homeobox114.64.9e-372183264
               Wus_type_Homeobox  2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64
                                    ++tRW+Pt+eQi+iLe+ly++G+rtP++e iq +ta+L++yG+ie+kNVfyWFQN+kaR+rqk
  FANhyb_rscf00004706.1.g00001.1 21 NTTRWNPTKEQITILEDLYEKGMRTPSAEFIQAVTARLNTYGHIEGKNVFYWFQNHKARQRQK 83
                                    689***********************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007110.2361883IPR001356Homeobox domain
SMARTSM003892.2E-42087IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.5E-82382IPR009057Homeodomain-like
PfamPF000464.7E-182382IPR001356Homeobox domain
SuperFamilySSF466895.13E-132389IPR009057Homeodomain-like
CDDcd000861.03E-42384No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008284Biological Processpositive regulation of cell proliferation
GO:0009942Biological Processlongitudinal axis specification
GO:0010654Biological Processapical cell fate commitment
GO:0048825Biological Processcotyledon development
GO:0080167Biological Processresponse to karrikin
GO:0090451Biological Processcotyledon boundary formation
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 117 aa     Download sequence    Send to blast
MEGEDQQVKK GGLALGVGLE NTTRWNPTKE QITILEDLYE KGMRTPSAEF IQAVTARLNT  60
YGHIEGKNVF YWFQNHKARQ RQKEKQESSL AYSNRFLHTA VASQYPLFPP PPQYPCS
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in embryonic patterning. Required for apical embryo development after fertilization. Its specific localization to the apical daughter cell of the zygote, while WOX8 is confined to the basal cell, suggests that the asymmetric division of the plant zygote separates determinants of apical and basal cell fates. {ECO:0000269|PubMed:14711878}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004295925.17e-65PREDICTED: WUSCHEL-related homeobox 2
SwissprotQ6X7K11e-37WOX2_ARATH; WUSCHEL-related homeobox 2
TrEMBLA0A2P6QII26e-57A0A2P6QII2_ROSCH; Putative transcription factor Homobox-WOX family
STRINGXP_004295925.13e-64(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF82563044
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59340.12e-38WUSCHEL related homeobox 2
Publications ? help Back to Top
  1. Liang Z,Brown RC,Fletcher JC,Opsahl-Sorteberg HG
    Calpain-Mediated Positional Information Directs Cell Wall Orientation to Sustain Plant Stem Cell Activity, Growth and Development.
    Plant Cell Physiol., 2015. 56(9): p. 1855-66
    [PMID:26220906]
  2. Zhu T,Moschou PN,Alvarez JM,Sohlberg JJ,von Arnold S
    WUSCHEL-RELATED HOMEOBOX 2 is important for protoderm and suspensor development in the gymnosperm Norway spruce.
    BMC Plant Biol., 2016. 16: p. 19
    [PMID:26786587]
  3. Zhang Z,Tucker E,Hermann M,Laux T
    A Molecular Framework for the Embryonic Initiation of Shoot Meristem Stem Cells.
    Dev. Cell, 2017. 40(3): p. 264-277.e4
    [PMID:28171749]