PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00003916.1.g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family NAC
Protein Properties Length: 414aa    MW: 45733.2 Da    PI: 6.7905
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00003916.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM171.72.2e-53221491128
                             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk 79 
                                     lppGfrFhPtdeel+++yL+ kv +  +     i+evd++++ePw+Lp  +k ++kewyfFs rd+ky+tg r+nrat 
  FANhyb_rscf00003916.1.g00001.1  22 LPPGFRFHPTDEELITFYLASKVYNGAFCG-VDIAEVDLNRCEPWELPDVAKMGDKEWYFFSLRDRKYPTGLRTNRATG 99 
                                     79*************************877.34***************888889************************* PP

                             NAM  80 sgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                                     +gyWkatgkdkev+s+ +g+l g+kktLvfykgrap+g+kt+Wvmheyrl
  FANhyb_rscf00003916.1.g00001.1 100 AGYWKATGKDKEVYSAsSGALLGMKKTLVFYKGRAPRGQKTKWVMHEYRL 149
                                     **************9978889***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.23E-6417172IPR003441NAC domain
PROSITE profilePS5100559.35122172IPR003441NAC domain
PfamPF023657.8E-2823149IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010014Biological Processmeristem initiation
GO:0010199Biological Processorgan boundary specification between lateral organs and the meristem
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 414 aa     Download sequence    Send to blast
MLGLMEEMSE LLGREEVNEQ GLPPGFRFHP TDEELITFYL ASKVYNGAFC GVDIAEVDLN  60
RCEPWELPDV AKMGDKEWYF FSLRDRKYPT GLRTNRATGA GYWKATGKDK EVYSASSGAL  120
LGMKKTLVFY KGRAPRGQKT KWVMHEYRLD GDFSSYRHTC KDEWVICRIH NKSGEKKNPM  180
QAQGQGEGQQ SNFLQQVVEA ASASASSGTG CSLPPLLEFQ SQTTHQNPSF LQSPSLLRMQ  240
ENDLMKSRNQ LFQLPSSSSS SSSSSSSAAA LQSMLFKSFL FPHQDQAGTT GTGTGAPKRC  300
KAEATNLPDF QTPPLNVANF NYLMEKNHSH VQPNGQDSLL QYHHHPRSSL SFDDFHYYNG  360
VLGLSTSAAT ASVDAETALS SASIGGFNRA GFQTMLDPLI KLPAAESSWN LDIA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A9e-53141757171Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Involved in molecular mechanisms regulating shoot apical meristem (SAM) formation during embryogenesis and organ separation. Required for axillary meristem initiation and separation of the meristem from the main stem. May act as an inhibitor of cell division. {ECO:0000269|PubMed:12837947, ECO:0000269|PubMed:17122068}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00241DAPTransfer from AT1G76420Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By BRM, at the chromatin level, and conferring a very specific spatial expression pattern. {ECO:0000269|PubMed:16854978}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004301620.10.0PREDICTED: protein CUP-SHAPED COTYLEDON 2
SwissprotQ9S8517e-99NAC31_ARATH; Protein CUP-SHAPED COTYLEDON 3
TrEMBLA0A2P6PBQ80.0A0A2P6PBQ8_ROSCH; Putative transcription factor NAM family
STRINGXP_004301620.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF78883347
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76420.12e-96NAC family protein
Publications ? help Back to Top
  1. Chen C, et al.
    Transcriptome profiling reveals roles of meristem regulators and polarity genes during fruit trichome development in cucumber (Cucumis sativus L.).
    J. Exp. Bot., 2014. 65(17): p. 4943-58
    [PMID:24962999]
  2. Gonçalves B, et al.
    A conserved role for CUP-SHAPED COTYLEDON genes during ovule development.
    Plant J., 2015. 83(4): p. 732-42
    [PMID:26119568]
  3. Balkunde R,Kitagawa M,Xu XM,Wang J,Jackson D
    SHOOT MERISTEMLESS trafficking controls axillary meristem formation, meristem size and organ boundaries in Arabidopsis.
    Plant J., 2017. 90(3): p. 435-446
    [PMID:28161901]
  4. Espinosa-Ruiz A, et al.
    TOPLESS mediates brassinosteroid control of shoot boundaries and root meristem development in Arabidopsis thaliana.
    Development, 2017. 144(9): p. 1619-1628
    [PMID:28320734]
  5. Koyama T,Sato F,Ohme-Takagi M
    Roles of miR319 and TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2017. 175(2): p. 874-885
    [PMID:28842549]