PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00002091.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family ERF
Protein Properties Length: 401aa    MW: 44247.8 Da    PI: 4.798
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00002091.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP223.61.3e-07177203126
                             AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng 26 
                                     s ykGVr++k +g+++AeIr  ++  + 
  FANhyb_rscf00002091.1.g00001.1 177 SLYKGVRRRK-WGKYAAEIRNpFRGiRA 203
                                     57*****998.**********6643333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541715.95E-5177202IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.108.5E-8178204IPR001471AP2/ERF domain
SMARTSM003800.001178259IPR001471AP2/ERF domain
PROSITE profilePS5103210.692178225IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MSSGFDILNG AQKKLLICCD QSLFIKASTF CMQFGAYSES SPVSYKPFRS QRNSSGVSFL  60
WGLAFRILNL RMPGIRTQVL NQDMYCMKVM AKQSRKEEDT SLKRRVRIMY TDPYATDSSS  120
EDDEQCNVNE YQSVPGRKVF VSEIVVGGMQ DESYAYGGRI GNTKNSDGSN KSQRSSSLYK  180
GVRRRKWGKY AAEIRNPFRG IRAIICTSVK AFIYLGDSQD SSVAAAPANE TFTYEETTSL  240
FCHPSPSSVL DLPPSKAALG GSEQPLSKEE LSNLKFPEAP LSSPSNAEEG YVLPLTEEAL  300
SILNVPEVPT YSAASAEEDF LQDKLSSLKF TEGLILSPIR TEDLGSLNSG YMDSDIVDGL  360
DQLFVGRSDI VDPPVYCDGN GQNILPPHKF LMSDLAGFCW D
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1179185KGVRRRK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004300530.10.0PREDICTED: ethylene-responsive transcription factor ERF118-like
RefseqXP_011465400.10.0PREDICTED: ethylene-responsive transcription factor ERF118-like
TrEMBLA0A3Q8TB270.0A0A3Q8TB27_FRAAN; Transcription factor ERF45
STRINGXP_004300530.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF134512027
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11140.13e-14cytokinin response factor 1